/
setup.cfg
139 lines (126 loc) · 3.09 KB
/
setup.cfg
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##########################
# Setup.py Configuration #
##########################
[metadata]
name = pyabc
version = attr: pyabc.version.__version__
description = Distributed, likelihood-free ABC-SMC inference
long_description = file: README.rst
long_description_content_type = text/x-rst
# URLs
url = https://github.com/icb-dcm/pyabc
download_url = https://github.com/icb-dcm/pyabc/releases
project_urls =
Bug Tracker = https://github.com/icb-dcm/pyabc/issues
Documentation = https://pyabc.readthedocs.io
Changelog = https://github.com/ICB-DCM/pyABC/blob/main/CHANGELOG.rst
# Author information
author = The pyABC developers
author_email = yannik.schaelte@gmail.com
maintainer = Yannik Schaelte
maintainer_email = yannik.schaelte@gmail.com
# License information
license = BSD-3-Clause
license_file = LICENSE.txt
# Search tags
classifiers =
Development Status :: 5 - Production/Stable
License :: OSI Approved :: BSD License
Operating System :: OS Independent
Programming Language :: Python
Programming Language :: Python :: 3.11
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.9
keywords =
likelihood-free
inference
abc
approximate bayesian computation
sge
distributed
[build-system]
requires =
wheel
setuptools
[options]
install_requires =
numpy >= 1.19.1
scipy >= 1.5.2
pandas >= 2.0.1
cloudpickle >= 1.5.0
scikit-learn >= 0.23.1
click >= 7.1.2
redis >= 2.10.6
distributed >= 2022.10.2
matplotlib >= 3.3.0
sqlalchemy >= 2.0.12
jabbar >= 0.0.10
gitpython >= 3.1.7
python_requires = >=3.9
# not zip safe b/c of Flask templates
zip_safe = False
include_package_data = True
# Where is my code
packages = find:
[options.extras_require]
webserver_flask =
flask-bootstrap >= 3.3.7.1
flask >= 1.1.2
bokeh >= 3.0.1
webserver_dash =
dash >= 2.11.1
dash-bootstrap-components >= 1.4.2
pyarrow =
pyarrow >= 6.0.0
R =
rpy2 >= 3.4.4
cffi >= 1.14.5
ipython >= 7.18.1
pygments >= 2.6.1
julia =
julia >= 0.5.7
pygments >= 2.6.1
copasi =
copasi-basico >= 0.8
ot =
pot >= 0.7.0
petab =
petab >= 0.2.0
amici =
amici >= 0.18.0
yaml2sbml =
yaml2sbml >= 0.2.1
migrate =
alembic >= 1.5.4
plotly =
plotly >= 5.3.1
kaleido >= 0.2.1
autograd =
autograd >= 1.3
examples =
notebook >= 6.1.4
doc =
sphinx >= 6.2.1
nbsphinx >= 0.8.9
nbconvert >= 6.5.0
sphinx-rtd-theme >= 1.2.0
sphinx-autodoc-typehints >= 1.18.3
ipython >= 8.4.0
test =
pytest >= 5.4.3
pytest-cov >= 2.10.0
pytest-rerunfailures >= 9.1.1
test-petab =
petabtests >= 0.0.0a6
[options.entry_points]
console_scripts =
abc-server-flask = pyabc.visserver.server_flask:run_app
abc-server-dash = pyabc.visserver.server_dash:run_app
abc-server = pyabc.visserver.server_dash:run_app
abc-redis-worker = pyabc.sampler.redis_eps.cli:work
abc-redis-manager = pyabc.sampler.redis_eps.cli:manage
abc-export = pyabc.storage.db_export:main
abc-migrate = pyabc.storage.migrate:migrate
[bdist_wheel]
# Requires python 3
universal = False