Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Sample numbers plots normalize by ESS #202

Open
yannikschaelte opened this issue Oct 23, 2019 · 2 comments
Open

Sample numbers plots normalize by ESS #202

yannikschaelte opened this issue Oct 23, 2019 · 2 comments

Comments

@yannikschaelte
Copy link
Member

Add an option to normalize the sample numbers and acceptance rates plot by the ESS.

@Havaldar
Copy link

Havaldar commented Sep 7, 2020

@yannikschaelte I was hoping to tackle this issue and just wanted to make sure no one was already on it. Also would normalizing the sample numbers be equivalent to the relative ESS plot or is it N / ESS? (I am really sorry if this is a silly question)

@yannikschaelte
Copy link
Member Author

Hi @Havaldar , I think no-one is working on this yet -- contributions are very welcome ;) .

For the acceptance rate trajectory, it would be not to plot population_size / n_samples, but ESS / n_samples. This would allow assessing how many simulations were needed per effectively accepted particle, which is something one is often interested in. Similarly, for the sample numbers (stacked bar and time series) plots, it would be not plotting n_samples, but n_samples * population_size / ESS.

However, on second thoughts I think that the latter may be kind of superfluous, as one can see the impact of samples per effective acceptance already in the acceptance rate plot, thus I think only the first one should suffice ...

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

3 participants