/
cluster.json
executable file
·142 lines (142 loc) · 2.84 KB
/
cluster.json
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{
"__default__" :
{
"cpus-per-task" : 1,
"partition" : "compute",
"mem" : "40G",
"time": "1-00:00:00"
},
"nextgenmap":
{
"cpus-per-task" : 3,
"partition" : "compute",
"mem" : "200G",
"time": "2-00:00:00"
},
"bowtie2":
{
"cpus-per-task" : 8,
"partition" : "compute",
"mem" : "100G",
"time": "2-00:00:00"
},
"kraken":
{
"cpus-per-task" : 8,
"partition" : "compute",
"mem" : "300G",
"time": "4-00:00:00"
},
"braken":
{
"cpus-per-task" : 2,
"partition" : "short",
"mem" : "50G",
"time": "0-02:00:00"
},
"statsbam":
{
"cpus-per-task" : 1,
"partition" : "short",
"mem" : "50G",
"time": "0-02:00:00"
},
"mpileup_call":
{
"cpus-per-task" : 2,
"partition" : "compute",
"mem" : "100G",
"time": "2-00:00:00"
},
"merge_allsites":
{
"cpus-per-task" : 4,
"partition" : "compute",
"mem" : "100G",
"time": "0-12:00:00"
},
"filter_allsites":
{
"cpus-per-task" : 2,
"partition" : "compute",
"mem" : "100G",
"time": "0-12:00:00"
},
"freebayes":
{
"cpus-per-task" : 2,
"partition" : "compute",
"mem" : "100G",
"time": "2-00:00:00"
},
"merge_snponly":
{
"cpus-per-task" : 4,
"partition" : "compute",
"mem" : "50G",
"time": "0-10:00:00"
},
"filter_snponly":
{
"cpus-per-task" : 2,
"partition" : "compute",
"mem" : "100G",
"time": "0-12:00:00"
},
"vcf2plink":
{
"cpus-per-task" : 1,
"partition" : "short",
"mem" : "40G",
"time": "0-02:00:00"
},
"plink_LDlist":
{
"cpus-per-task" : 1,
"partition" : "short",
"mem" : "40G",
"time": "0-02:00:00"
},
"LDpruning":
{
"cpus-per-task" : 1,
"partition" : "short",
"mem" : "50G",
"time": "0-02:00:00"
},
"vcf2GL":
{
"cpus-per-task" : 2,
"partition" : "short",
"mem" : "50G",
"time": "0-02:00:00"
},
"NGSadmix":
{
"cpus-per-task" : 2,
"partition" : "short",
"mem" : "100G",
"time": "0-02:00:00"
},
"freebayes_mtDNA":
{
"cpus-per-task" : 4,
"partition" : "compute",
"mem" : "200G",
"time": "0-12:00:00"
},
"filter_mtDNA":
{
"cpus-per-task" : 2,
"partition" : "compute",
"mem" : "50G",
"time": "0-05:00:00"
},
"mtDNA_consensus":
{
"cpus-per-task" : 1,
"partition" : "short",
"mem" : "20G",
"time": "0-00:40:00"
}
}