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Autogenerate TMT annotations Automatically #1526

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kwebber3 opened this issue Apr 9, 2024 · 1 comment
Closed

Autogenerate TMT annotations Automatically #1526

kwebber3 opened this issue Apr 9, 2024 · 1 comment
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@kwebber3
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kwebber3 commented Apr 9, 2024

In PD the data format is more convenient because it just gives you the Experiment/filename and then the intensity of each channel.
[example protein output]
(https://github.com/Nesvilab/FragPipe/files/14921624/example_TMT_output.txt)
@fcyu fcyu self-assigned this Apr 9, 2024
@fcyu fcyu added the FragPipe label Apr 9, 2024
fcyu added a commit that referenced this issue Jun 12, 2024
@fcyu
Change the default TMT sample name to experiment_label.
c30f81a 
Related to #1526
fcyu added a commit that referenced this issue Jun 12, 2024
@fcyu
Automatically generate TMT annotation files if they are not provided.
24e5f1e 
#1526
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fcyu commented Jun 12, 2024

Implemented in c30f81a and 24e5f1e

Best,

Fengchao

@fcyu fcyu closed this as completed Jun 12, 2024
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