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memory error #7

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JohnGriffiths opened this issue Jun 28, 2017 · 1 comment
Open

memory error #7

JohnGriffiths opened this issue Jun 28, 2017 · 1 comment

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@JohnGriffiths
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JohnGriffiths commented Jun 28, 2017

Having issue reading in the HCP groupPCA data; get a memory error

f = 'HCP_S900_820_rfMRI_MSMAll_groupPCA_d4500ROW_zcorr.dconn.nii'    
dcon = np.tanh(nib.load(f).get_data()[:])

Do you have any suggestions on this?

(Looks like maybe this is what the hcp_corr repo is for; but can't quite tell if that gives same output as the above line)

Thx.

@murphyyhuang
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Old post but ...
This .dconn.nii contains the voxel-wise functional connectivity matrix. The uncompressed raw data is around 60 GB.
You need a server with memory greater than 64GB.

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