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compiling on ranger #597

Closed
maeneas opened this issue Nov 1, 2012 · 7 comments
Closed

compiling on ranger #597

maeneas opened this issue Nov 1, 2012 · 7 comments
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@brycelelbach
Labels
affecting: IU category: CMake type: defect
Milestone
0.9.5

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@maeneas
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maeneas commented Nov 1, 2012

Compiling gtcx on ranger using boost 1.48 and gcc 4.4.3, top of trunk for hpx. I see this linking error:

[ 2%] Built target hpx_serialization
[ 5%] Building CXX object src/CMakeFiles/hpx.dir/util/query_counters.cpp.o
[ 5%] Building CXX object src/CMakeFiles/hpx.dir/util/register_locks.cpp.o
[ 5%] Building CXX object src/CMakeFiles/hpx.dir/util/runtime_configuration.cpp.o
[ 5%] Building CXX object src/CMakeFiles/hpx.dir/util/sed_transform.cpp.o
[ 8%] Building CXX object src/CMakeFiles/hpx.dir/util/serialize_exception.cpp.o
[ 8%] Building CXX object src/CMakeFiles/hpx.dir/util/static_reinit.cpp.o
[ 8%] Building CXX object src/CMakeFiles/hpx.dir/util/thread_mapper.cpp.o
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/lcos/barrier/barrier.cpp.o
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/lcos/base_lco.cpp.o
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/lcos/base_lco_with_value.cpp.o
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/lcos/detail/full_empty_entry.cpp.o
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/lcos/local/mutex.cpp.o
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/lcos/local/recursive_mutex.cpp.o
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/__/external/backtrace/libs/backtrace/src/backtrace.cpp.o
[ 16%] Building CXX object src/CMakeFiles/hpx.dir/util/coroutine/swapcontext.cpp.o
Linking CXX shared library ../lib/hpx/libhpx.so
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.gnu.linkonce.t._ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6_' referenced in section.gnu.linkonce.r.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cpp.o: defined in discarded section .gnu.linkonce.t._ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6_' of CMakeFiles/hpx.dir/hpx_init.cpp.o .gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' referenced in section .gnu.linkonce.r._ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6_' of CMakeFiles/hpx.dir/hpx_init.cpp.o: defined in discarded section.gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cpp.o
.gnu.linkonce.t._ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6_' referenced in section.gnu.linkonce.r.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cpp.o: defined in discarded section .gnu.linkonce.t._ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6_' of CMakeFiles/hpx.dir/hpx_init.cpp.o .gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' referenced in section .gnu.linkonce.r._ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6_' of CMakeFiles/hpx.dir/hpx_init.cpp.o: defined in discarded section.gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cpp.o
.gnu.linkonce.t._ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6_' referenced in section.gnu.linkonce.r.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cpp.o: defined in discarded section .gnu.linkonce.t._ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6_' of CMakeFiles/hpx.dir/hpx_init.cpp.o .gnu.linkonce.t.ZN3hpx4util6detail6vtableILb0EE4typeINS1_14bound_functor4INS_7actions6actionINS_4lcos19base_lco_with_valueISt6vectorINS_4agas8responseESaISC_EESE_EELi1EN5boost6fusion11unused_typeENS0_6tuple1ISE_EENS6_14direct_action1ISF_Li1EOSE_XadL_ZNSF_17set_value_nonvirtESM_EENS6
@maeneas
Copy link
Contributor Author

maeneas commented Nov 1, 2012

This was what Bryce recommended:

Hey Matt,

    I thought I had built on ranger, but it turns out I have not. You should be

able to compile with either GCC or Intel. Unforunately, you may be unable to
run through PBS though, as there is no pbsdsh.

    To use GCC do:

    module load gcc/4.4.5
    module load boost/1.48.0

    To use Intel do:

    module load intel/12.1
    module load boost/1.48.0

I attempted the gcc build first since intel has never worked in the past on any machine other than windows.

So I followed those instructions:
module load gcc/4.4.5
module load boost/1.48.0

This is what I saw:

login3$ make examples.gtcx
Scanning dependencies of target hpx_init
[ 0%] Building CXX object src/CMakeFiles/hpx_init.dir/hpx_main.cpp.o
[ 2%] Building CXX object src/CMakeFiles/hpx_init.dir/hpx_main_argc_argv.cpp.o
[ 2%] Building CXX object src/CMakeFiles/hpx_init.dir/hpx_main_variables_map.cpp.o
[ 2%] Building CXX object src/CMakeFiles/hpx_init.dir/hpx_user_main.cpp.o
[ 5%] Building CXX object src/CMakeFiles/hpx_init.dir/hpx_user_main_argc_argv.cpp.o
[ 5%] Building CXX object src/CMakeFiles/hpx_init.dir/main.cpp.o
Linking CXX static library ../lib/hpx/libhpx_init.a
[ 5%] Built target hpx_init
Scanning dependencies of target hpx_serialization
[ 5%] Building CXX object src/CMakeFiles/hpx_serialization.dir/util/portable_binary_iarchive.cpp.o
[ 8%] Building CXX object src/CMakeFiles/hpx_serialization.dir/util/portable_binary_oarchive.cpp.o
Linking CXX shared library ../lib/hpx/libhpx_serialization.so
[ 8%] Built target hpx_serialization
Scanning dependencies of target hpx
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/exception.cpp.o
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/exception_list.cpp.o
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/hpx_init.cpp.o
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/runtime.cpp.o
In file included from /share/home/00626/tg457945/hpxgit/hpx/src/runtime.cpp:27:
/share/home/00626/tg457945/hpxgit/hpx/hpx/runtime/threads/policies/linux_topology.hpp:76: warning: expected [error|warning|ignored] after '#pragma GCC diagnostic' [-Wpragmas]
/share/home/00626/tg457945/hpxgit/hpx/hpx/runtime/threads/policies/linux_topology.hpp:113: warning: expected [error|warning|ignored] after '#pragma GCC diagnostic' [-Wpragmas]
/share/home/00626/tg457945/hpxgit/hpx/hpx/runtime/threads/policies/linux_topology.hpp:114: warning: expected [error|warning|ignored] after '#pragma GCC diagnostic' [-Wpragmas]
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/runtime_impl.cpp.o
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/state.cpp.o
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/version.cpp.o
[ 16%] Building CXX object src/CMakeFiles/hpx.dir/pre_main.cpp.o
[ 16%] Building CXX object src/CMakeFiles/hpx.dir/runtime/actions/action_manager.cpp.o
[ 16%] Building CXX object src/CMakeFiles/hpx.dir/runtime/actions/continuation.cpp.o
[ 18%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/addressing_service.cpp.o
[ 18%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/big_boot_barrier.cpp.o
[ 18%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/component_namespace.cpp.o
[ 18%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/interface.cpp.o
[ 21%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/primary_namespace.cpp.o
[ 21%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/response.cpp.o
[ 21%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/server/component_namespace.cpp.o
[ 21%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/server/primary_namespace.cpp.o
[ 24%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/server/route.cpp.o
[ 24%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/server/symbol_namespace.cpp.o
[ 24%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/stubs/component_namespace.cpp.o
[ 27%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/stubs/primary_namespace.cpp.o
[ 27%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/stubs/symbol_namespace.cpp.o
[ 27%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/symbol_namespace.cpp.o
[ 27%] Building CXX object src/CMakeFiles/hpx.dir/runtime/applier/applier.cpp.o
[ 29%] Building CXX object src/CMakeFiles/hpx.dir/runtime/applier/bind_naming_wrappers.cpp.o
[ 29%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/component_type.cpp.o
[ 29%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/console_error_sink.cpp.o
[ 32%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/console_logging.cpp.o
[ 32%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/server/console_error_sink.cpp.o
[ 32%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/server/console_error_sink_singleton.cpp.o
[ 32%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/server/console_logging.cpp.o
[ 35%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/server/memory.cpp.o
[ 35%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/server/memory_block.cpp.o
[ 35%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/server/runtime_support.cpp.o
[ 37%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/stubs/runtime_support.cpp.o
[ 37%] Building CXX object src/CMakeFiles/hpx.dir/runtime/naming/address.cpp.o
[ 37%] Building CXX object src/CMakeFiles/hpx.dir/runtime/naming/locality.cpp.o
[ 37%] Building CXX object src/CMakeFiles/hpx.dir/runtime/naming/name.cpp.o
[ 40%] Building CXX object src/CMakeFiles/hpx.dir/runtime/parcelset/parcel.cpp.o
[ 40%] Building CXX object src/CMakeFiles/hpx.dir/runtime/parcelset/parcelhandler.cpp.o
[ 40%] Building CXX object src/CMakeFiles/hpx.dir/runtime/parcelset/parcelport.cpp.o
[ 43%] Building CXX object src/CMakeFiles/hpx.dir/runtime/parcelset/parcelport_connection.cpp.o
[ 43%] Building CXX object src/CMakeFiles/hpx.dir/runtime/threads/thread.cpp.o
[ 43%] Building CXX object src/CMakeFiles/hpx.dir/runtime/threads/thread_data.cpp.o
[ 43%] Building CXX object src/CMakeFiles/hpx.dir/runtime/threads/thread_helpers.cpp.o
[ 45%] Building CXX object src/CMakeFiles/hpx.dir/runtime/threads/threadmanager.cpp.o
In file included from /opt/apps/gcc4_4/boost/1.48.0/include/boost/make_shared.hpp:15,
from /share/home/00626/tg457945/hpxgit/hpx/src/runtime/threads/threadmanager.cpp:26:
/opt/apps/gcc4_4/boost/1.48.0/include/boost/smart_ptr/make_shared.hpp: In function 'T&& boost::detail::sp_forward(T&) [with T = bool]':
/opt/apps/gcc4_4/boost/1.48.0/include/boost/smart_ptr/make_shared.hpp:167: instantiated from 'boost::shared_ptr boost::make_shared(Arg1&&, Args&& ...) [with T = boost::atomic, Arg1 = bool, Args = ]'
/share/home/00626/tg457945/hpxgit/hpx/src/runtime/threads/threadmanager.cpp:808: instantiated from 'hpx::threads::thread_state_enum hpx::threads::threadmanager_impl<SchedulingPolicy, NotificationPolicy>::at_timer(const TimeType&, void_, hpx::threads::thread_state_enum, hpx::threads::thread_state_ex_enum, hpx::threads::thread_priority) [with TimeType = boost::posix_time::ptime, SchedulingPolicy = hpx::threads::policies::local_priority_queue_scheduler, NotificationPolicy = hpx::threads::policies::callback_notifier]'
/share/home/00626/tg457945/hpxgit/hpx/src/runtime/threads/threadmanager.cpp:859: instantiated from 'void_ hpx::threads::threadmanager_impl<SchedulingPolicy, NotificationPolicy>::set_state(const boost::posix_time::ptime&, void*, hpx::threads::thread_state_enum, hpx::threads::thread_state_ex_enum, hpx::threads::thread_priority, hpx::error_code&) [with SchedulingPolicy = hpx::threads::policies::local_priority_queue_scheduler, NotificationPolicy = hpx::threads::policies::callback_notifier]'
/share/home/00626/tg457945/hpxgit/hpx/src/runtime/threads/threadmanager.cpp:1872: instantiated from here
/opt/apps/gcc4_4/boost/1.48.0/include/boost/smart_ptr/make_shared.hpp:104: warning: returning reference to temporary
[ 45%] Building CXX object src/CMakeFiles/hpx.dir/runtime/threads/threadmanager_base.cpp.o
[ 45%] Building CXX object src/CMakeFiles/hpx.dir/runtime/threads/topology.cpp.o
[ 48%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/counter_creators.cpp.o
[ 48%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/counters.cpp.o
/share/home/00626/tg457945/hpxgit/hpx/src/performance_counters/counters.cpp: In function 'hpx::performance_counters::counter_status hpx::performance_counters::add_counter_type(const hpx::performance_counters::counter_info&, const hpx::util::function_nonser<hpx::naming::gid_type(const hpx::performance_counters::counter_info&, hpx::error_code&)>&, const hpx::util::function_nonser<bool(const hpx::performance_counters::counter_info&, const hpx::util::function_nonser<bool(const hpx::performance_counters::counter_info&, hpx::error_code&)>&, hpx::performance_counters::discover_counters_mode, hpx::error_code&)>&, hpx::error_code&)':
/share/home/00626/tg457945/hpxgit/hpx/src/performance_counters/counters.cpp:467: warning: unused variable 'rt' [-Wunused-variable]
[ 48%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/manage_counter.cpp.o
[ 48%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/manage_counter_type.cpp.o
[ 51%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/registry.cpp.o
[ 51%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/server/aggregating_counter.cpp.o
[ 51%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/server/component_instance_counter.cpp.o
[ 54%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/server/elapsed_time_counter.cpp.o
[ 54%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/server/raw_counter.cpp.o
[ 54%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/stubs/performance_counter.cpp.o
[ 54%] Building CXX object src/CMakeFiles/hpx.dir/util/asio_util.cpp.o
[ 56%] Building CXX object src/CMakeFiles/hpx.dir/util/batch_environment.cpp.o
[ 56%] Building CXX object src/CMakeFiles/hpx.dir/util/command_line_handling.cpp.o
[ 56%] Building CXX object src/CMakeFiles/hpx.dir/util/find_prefix.cpp.o
[ 56%] Building CXX object src/CMakeFiles/hpx.dir/util/generate_unique_ids.cpp.o
[ 59%] Building CXX object src/CMakeFiles/hpx.dir/util/ini.cpp.o
[ 59%] Building CXX object src/CMakeFiles/hpx.dir/util/init_ini_data.cpp.o
[ 59%] Building CXX object src/CMakeFiles/hpx.dir/util/interval_timer.cpp.o
[ 62%] Building CXX object src/CMakeFiles/hpx.dir/util/io_service_pool.cpp.o
[ 62%] Building CXX object src/CMakeFiles/hpx.dir/util/itt_notify.cpp.o
[ 62%] Building CXX object src/CMakeFiles/hpx.dir/util/locality_result.cpp.o
[ 62%] Building CXX object src/CMakeFiles/hpx.dir/util/logging.cpp.o
[ 64%] Building CXX object src/CMakeFiles/hpx.dir/util/manage_config.cpp.o
[ 64%] Building CXX object src/CMakeFiles/hpx.dir/util/map_hostnames.cpp.o
[ 64%] Building CXX object src/CMakeFiles/hpx.dir/util/parse_command_line.cpp.o
[ 67%] Building CXX object src/CMakeFiles/hpx.dir/util/query_counters.cpp.o
[ 67%] Building CXX object src/CMakeFiles/hpx.dir/util/register_locks.cpp.o
[ 67%] Building CXX object src/CMakeFiles/hpx.dir/util/runtime_configuration.cpp.o
[ 67%] Building CXX object src/CMakeFiles/hpx.dir/util/sed_transform.cpp.o
[ 70%] Building CXX object src/CMakeFiles/hpx.dir/util/serialize_exception.cpp.o
[ 70%] Building CXX object src/CMakeFiles/hpx.dir/util/static_reinit.cpp.o
[ 70%] Building CXX object src/CMakeFiles/hpx.dir/util/thread_mapper.cpp.o
[ 72%] Building CXX object src/CMakeFiles/hpx.dir/lcos/barrier/barrier.cpp.o
[ 72%] Building CXX object src/CMakeFiles/hpx.dir/lcos/base_lco.cpp.o
[ 72%] Building CXX object src/CMakeFiles/hpx.dir/lcos/base_lco_with_value.cpp.o
[ 72%] Building CXX object src/CMakeFiles/hpx.dir/lcos/detail/full_empty_entry.cpp.o
[ 75%] Building CXX object src/CMakeFiles/hpx.dir/lcos/local/mutex.cpp.o
[ 75%] Building CXX object src/CMakeFiles/hpx.dir/lcos/local/recursive_mutex.cpp.o
[ 75%] Building CXX object src/CMakeFiles/hpx.dir/__/external/backtrace/libs/backtrace/src/backtrace.cpp.o
[ 78%] Building CXX object src/CMakeFiles/hpx.dir/util/coroutine/swapcontext.cpp.o
Linking CXX shared library ../lib/hpx/libhpx.so
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maeneas commented Nov 1, 2012

Attempting to configure with intel gives this error:

[hpx.info.gcc_config] Compiler reports compatibility with GCC version 3.4.6

CMake Error at cmake/HPX_Message.cmake:29 (message):
[hpx.error.gcc_config] GCC 4.4.x or higher is required.
Call Stack (most recent call first):
CMakeLists.txt:214 (hpx_error)

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maeneas commented Nov 1, 2012

A little more on the intel configuration issue: here are the settings I used:

CMAKE_C_COMPILER /opt/apps/intel/12.1/composerxe/bin/icc
CMAKE_C_COMPILER_WITH_PATH /opt/apps/intel/12.1/composerxe/bin/icc
CMAKE_CXX_COMPILER /opt/apps/intel/12.1/composerxe/bin/icpc
CMAKE_CXX_COMPILER_WITH_PATH /opt/apps/intel/12.1/composerxe/bin/icpc
CMAKE_Fortran_COMPILER /opt/apps/intel/12.1/composerxe/bin/ifort
CMAKE_Fortran_COMPILER_WITH_PA /opt/apps/intel/12.1/composerxe/bin/ifort

@brycelelbach
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GCC 4.4.3 is not supported; GCC 4.4.5 is the minimum required version. The Intel compiler is not actively maintained.

You will need to compile GCC or ask the sysadmins for an upgrade.

Bryce Adelstein-Lelbach aka wash

STE||AR Group, Center for Computation and Science, LSU

860-808-7497 - Cell

225-578-6182 - Work (no voicemail)

boost-spirit.com
stellar.cct.lsu.edu

llvm.linuxfoundation.org

On Oct 31, 2012, at 9:56 PM, Matthew Anderson notifications@github.com wrote:

Compiling gtcx on ranger using boost 1.48 and gcc 4.4.3, top of trunk for hpx. I see this linking error:

[ 2%] Built target hpx_serialization
[ 5%] Building CXX object src/CMakeFiles/hpx.dir/util/query_counters.cpp.o
[ 5%] Building CXX object src/CMakeFiles/hpx.dir/util/register_locks.cpp.o
[ 5%] Building CXX object src/CMakeFiles/hpx.dir/util/runtime_configuration.cpp.o
[ 5%] Building CXX object src/CMakeFiles/hpx.dir/util/sed_transform.cpp.o
[ 8%] Building CXX object src/CMakeFiles/hpx.dir/util/serialize_exception.cpp.o
[ 8%] Building CXX object src/CMakeFiles/hpx.dir/util/static_reinit.cpp.o
[ 8%] Building CXX object src/CMakeFiles/hpx.dir/util/thread_mapper.cpp.o
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/lcos/barrier/barrier.cpp.o
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/lcos/base_lco.cpp.o
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/lcos/base_lco_with_value.cpp.o
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/lcos/detail/full_empty_entry.cpp.o
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/lcos/local/mutex.cpp.o
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/lcos/local/recursive_mutex.cpp.o
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/__/external/backtrace/libs/backtrace/src/backtrace.cpp.o
[ 16%] Building CXX object src/CMakeFiles/hpx.dir/util/coroutine/swapcontext.cpp.o
Linking CXX shared library ../lib/hpx/libhpx.so
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.gnu.linkonce.t.ZN3hpx7applier6detail12apply_he lperINS_7actions14direct_action1INS_4lcos19base_lco_with_valueISt6vectorINS_4agas8responseESaIS9_EESB_EELi1EOSB_XadL_ZNSC_17set_value_nonvirtESD_EENS3_6detail9this_typeEEEN4mpl_5bool_ILb1EEEE4callINS_4util6tuple1ISB_EEEEvmNS_7threads15thread_priorityEOT' referenced in section.gnu.linkonce.r.ZN3hpx7applier6detail12apply_helperINS_7actions14direct_action1INS_4lcos19base_lco_with_valueISt6vectorINS_4agas8responseESaIS9_EESB_EELi1EOSB_XadL_ZNSC_17set_value_nonvirtESD_EENS3_6detail9this_typeEEEN4mpl_5bool_ILb1EEEE4callINS_4util6tuple1ISB_EEEEvmNS_7threads15thread_priorityEOT' of CMakeFiles/hpx.dir/hpx_init.cpp.o: defined in discarded section .gnu.linkonce.t.ZN3hpx7applier6detail12apply_helperINS_7actions14direct_action1INS_4lcos19base_lco_with_valueISt6vectorINS_4agas8responseESaIS9_EESB_EELi1EOSB_XadL_ZNSC_17set_value_nonvirtESD_EENS3_6detail9this_typeEEEN4mpl_5bool_ILb1EEEE4callINS_4util6tuple1ISB_EEEEvmNS_7threads15thread_priorityEOT' of CMakeFiles/hpx.dir/hp x_init.cpp.o
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.gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' referenced in section .gnu.linkonce.r.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMake Files/hpx.dir/hpx_init.cpp.o: defined in discarded section.gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cpp.o
.gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' referenced in section.gnu.linkonce.r.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cpp.o: defined in discarded section .gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cpp.o
.gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' referenced in section .gnu.linkonce.r.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFile s/hpx.dir/hpx_init.cpp.o: defined in discarded section.gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cpp.o
.gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' referenced in section.gnu.linkonce.r.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cpp.o: defined in discarded section .gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cpp.o
.gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' referenced in section .gnu.linkonce.r.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hp x.dir/hpx_init.cpp.o: defined in discarded section.gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cpp.o
.gnu.linkonce.t.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' referenced in section.gnu.linkonce.r.ZNK3hpx7actions21base_lco_continuationISt6vectorINS_4agas8responseESaIS4_EEE13trigger_valueEOS6' of CMakeFiles/hpx.dir/hpx_init.cp

@brycelelbach
Copy link
Member

Matt, the problem is, even with gcc 4.4.5 loaded, the linker is too old. Please check to see if there is a newer version of binutils available.

Bryce Adelstein-Lelbach aka wash

STE||AR Group, Center for Computation and Science, LSU

860-808-7497 - Cell

225-578-6182 - Work (no voicemail)

boost-spirit.com
stellar.cct.lsu.edu

llvm.linuxfoundation.org

On Nov 1, 2012, at 12:40 PM, Matthew Anderson notifications@github.com wrote:

This was what Bryce recommended:

Hey Matt,

I thought I had built on ranger, but it turns out I have not. You should be

able to compile with either GCC or Intel. Unforunately, you may be unable to
run through PBS though, as there is no pbsdsh.

To use GCC do:

module load gcc/4.4.5
module load boost/1.48.0

To use Intel do:

module load intel/12.1
module load boost/1.48.0

I attempted the gcc build first since intel has never worked in the past on any machine other than windows.

So I followed those instructions:
module load gcc/4.4.5
module load boost/1.48.0

This is what I saw:

login3$ make examples.gtcx
Scanning dependencies of target hpx_init
[ 0%] Building CXX object src/CMakeFiles/hpx_init.dir/hpx_main.cpp.o
[ 2%] Building CXX object src/CMakeFiles/hpx_init.dir/hpx_main_argc_argv.cpp.o
[ 2%] Building CXX object src/CMakeFiles/hpx_init.dir/hpx_main_variables_map.cpp.o
[ 2%] Building CXX object src/CMakeFiles/hpx_init.dir/hpx_user_main.cpp.o
[ 5%] Building CXX object src/CMakeFiles/hpx_init.dir/hpx_user_main_argc_argv.cpp.o
[ 5%] Building CXX object src/CMakeFiles/hpx_init.dir/main.cpp.o
Linking CXX static library ../lib/hpx/libhpx_init.a
[ 5%] Built target hpx_init
Scanning dependencies of target hpx_serialization
[ 5%] Building CXX object src/CMakeFiles/hpx_serialization.dir/util/portable_binary_iarchive.cpp.o
[ 8%] Building CXX object src/CMakeFiles/hpx_serialization.dir/util/portable_binary_oarchive.cpp.o
Linking CXX shared library ../lib/hpx/libhpx_serialization.so
[ 8%] Built target hpx_serialization
Scanning dependencies of target hpx
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/exception.cpp.o
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/exception_list.cpp.o
[ 10%] Building CXX object src/CMakeFiles/hpx.dir/hpx_init.cpp.o
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/runtime.cpp.o
In file included from /share/home/00626/tg457945/hpxgit/hpx/src/runtime.cpp:27:
/share/home/00626/tg457945/hpxgit/hpx/hpx/runtime/threads/policies/linux_topology.hpp:76: warning: expected [error|warning|ignored] after '#pragma GCC diagnostic' [-Wpragmas]
/share/home/00626/tg457945/hpxgit/hpx/hpx/runtime/threads/policies/linux_topology.hpp:113: warning: expected [error|warning|ignored] after '#pragma GCC diagnostic' [-Wpragmas]
/share/home/00626/tg457945/hpxgit/hpx/hpx/runtime/threads/policies/linux_topology.hpp:114: warning: expected [error|warning|ignored] after '#pragma GCC diagnostic' [-Wpragmas]
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/runtime_impl.cpp.o
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/state.cpp.o
[ 13%] Building CXX object src/CMakeFiles/hpx.dir/version.cpp.o
[ 16%] Building CXX object src/CMakeFiles/hpx.dir/pre_main.cpp.o
[ 16%] Building CXX object src/CMakeFiles/hpx.dir/runtime/actions/action_manager.cpp.o
[ 16%] Building CXX object src/CMakeFiles/hpx.dir/runtime/actions/continuation.cpp.o
[ 18%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/addressing_service.cpp.o
[ 18%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/big_boot_barrier.cpp.o
[ 18%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/component_namespace.cpp.o
[ 18%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/interface.cpp.o
[ 21%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/primary_namespace.cpp.o
[ 21%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/response.cpp.o
[ 21%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/server/component_namespace.cpp.o
[ 21%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/server/primary_namespace.cpp.o
[ 24%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/server/route.cpp.o
[ 24%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/server/symbol_namespace.cpp.o
[ 24%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/stubs/component_namespace.cpp.o
[ 27%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/stubs/primary_namespace.cpp.o
[ 27%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/stubs/symbol_namespace.cpp.o
[ 27%] Building CXX object src/CMakeFiles/hpx.dir/runtime/agas/symbol_namespace.cpp.o
[ 27%] Building CXX object src/CMakeFiles/hpx.dir/runtime/applier/applier.cpp.o
[ 29%] Building CXX object src/CMakeFiles/hpx.dir/runtime/applier/bind_naming_wrappers.cpp.o
[ 29%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/component_type.cpp.o
[ 29%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/console_error_sink.cpp.o
[ 32%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/console_logging.cpp.o
[ 32%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/server/console_error_sink.cpp.o
[ 32%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/server/console_error_sink_singleton.cpp.o
[ 32%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/server/console_logging.cpp.o
[ 35%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/server/memory.cpp.o
[ 35%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/server/memory_block.cpp.o
[ 35%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/server/runtime_support.cpp.o
[ 37%] Building CXX object src/CMakeFiles/hpx.dir/runtime/components/stubs/runtime_support.cpp.o
[ 37%] Building CXX object src/CMakeFiles/hpx.dir/runtime/naming/address.cpp.o
[ 37%] Building CXX object src/CMakeFiles/hpx.dir/runtime/naming/locality.cpp.o
[ 37%] Building CXX object src/CMakeFiles/hpx.dir/runtime/naming/name.cpp.o
[ 40%] Building CXX object src/CMakeFiles/hpx.dir/runtime/parcelset/parcel.cpp.o
[ 40%] Building CXX object src/CMakeFiles/hpx.dir/runtime/parcelset/parcelhandler.cpp.o
[ 40%] Building CXX object src/CMakeFiles/hpx.dir/runtime/parcelset/parcelport.cpp.o
[ 43%] Building CXX object src/CMakeFiles/hpx.dir/runtime/parcelset/parcelport_connection.cpp.o
[ 43%] Building CXX object src/CMakeFiles/hpx.dir/runtime/threads/thread.cpp.o
[ 43%] Building CXX object src/CMakeFiles/hpx.dir/runtime/threads/thread_data.cpp.o
[ 43%] Building CXX object src/CMakeFiles/hpx.dir/runtime/threads/thread_helpers.cpp.o
[ 45%] Building CXX object src/CMakeFiles/hpx.dir/runtime/threads/threadmanager.cpp.o
In file included from /opt/apps/gcc4_4/boost/1.48.0/include/boost/make_shared.hpp:15,
from /share/home/00626/tg457945/hpxgit/hpx/src/runtime/threads/threadmanager.cpp:26:
/opt/apps/gcc4_4/boost/1.48.0/include/boost/smart_ptr/make_shared.hpp: In function 'T&& boost::detail::sp_forward(T&) [with T = bool]':
/opt/apps/gcc4_4/boost/1.48.0/include/boost/smart_ptr/make_shared.hpp:167: instantiated from 'boost::shared_ptr boost::make_shared(Arg1&&, Args&& ...) [with T = boost::atomic, Arg1 = bool, Args = ]'
/share/home/00626/tg457945/hpxgit/hpx/src/runtime/threads/threadmanager.cpp:808: instantiated from 'hpx::threads::thread_state_enum hpx::threads::threadmanager_impl::at_timer(const TimeType&, void_, hpx::threads::thread_state_enum, hpx::threads::thread_state_ex_enum, hpx::threads::thread_priority) [with TimeType = boost::posix_time::ptime, SchedulingPolicy = hpx::threads::policies::local_priority_queue_scheduler, NotificationPolicy = hpx::threads::policies::callback_notifier]'
/share/home/00626/tg457945/hpxgit/hpx/src/runtime/threads/threadmanager.cpp:859: instantiated from 'void_ hpx::threads::threadmanager_impl::set_state(const boost::posix_time::ptime&, void*, hpx::threads::thread_state_enum, hpx::threads::thread_state_ex_enum, hpx::threads::thread_priority, hpx::error_code&) [with SchedulingPolicy = hpx::threads::policies::local_priority_queue_scheduler, NotificationPolicy = hpx::threads::policies::callback_notifier]'
/share/home/00626/tg457945/hpxgit/hpx/src/runtime/threads/threadmanager.cpp:1872: instantiated from here
/opt/apps/gcc4_4/boost/1.48.0/include/boost/smart_ptr/make_shared.hpp:104: warning: returning reference to temporary
[ 45%] Building CXX object src/CMakeFiles/hpx.dir/runtime/threads/threadmanager_base.cpp.o
[ 45%] Building CXX object src/CMakeFiles/hpx.dir/runtime/threads/topology.cpp.o
[ 48%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/counter_creators.cpp.o
[ 48%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/counters.cpp.o
/share/home/00626/tg457945/hpxgit/hpx/src/performance_counters/counters.cpp: In function 'hpx::performance_counters::counter_status hpx::performance_counters::add_counter_type(const hpx::performance_counters::counter_info&, const hpx::util::function_nonser&, const hpx::util::function_nonser&, hpx::performance_counters::discover_counters_mode, hpx::error_code&)>&, hpx::error_code&)':
/share/home/00626/tg457945/hpxgit/hpx/src/performance_counters/counters.cpp:467: warning: unused variable 'rt' [-Wunused-variable]
[ 48%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/manage_counter.cpp.o
[ 48%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/manage_counter_type.cpp.o
[ 51%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/registry.cpp.o
[ 51%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/server/aggregating_counter.cpp.o
[ 51%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/server/component_instance_counter.cpp.o
[ 54%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/server/elapsed_time_counter.cpp.o
[ 54%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/server/raw_counter.cpp.o
[ 54%] Building CXX object src/CMakeFiles/hpx.dir/performance_counters/stubs/performance_counter.cpp.o
[ 54%] Building CXX object src/CMakeFiles/hpx.dir/util/asio_util.cpp.o
[ 56%] Building CXX object src/CMakeFiles/hpx.dir/util/batch_environment.cpp.o
[ 56%] Building CXX object src/CMakeFiles/hpx.dir/util/command_line_handling.cpp.o
[ 56%] Building CXX object src/CMakeFiles/hpx.dir/util/find_prefix.cpp.o
[ 56%] Building CXX object src/CMakeFiles/hpx.dir/util/generate_unique_ids.cpp.o
[ 59%] Building CXX object src/CMakeFiles/hpx.dir/util/ini.cpp.o
[ 59%] Building CXX object src/CMakeFiles/hpx.dir/util/init_ini_data.cpp.o
[ 59%] Building CXX object src/CMakeFiles/hpx.dir/util/interval_timer.cpp.o
[ 62%] Building CXX object src/CMakeFiles/hpx.dir/util/io_service_pool.cpp.o
[ 62%] Building CXX object src/CMakeFiles/hpx.dir/util/itt_notify.cpp.o
[ 62%] Building CXX object src/CMakeFiles/hpx.dir/util/locality_result.cpp.o
[ 62%] Building CXX object src/CMakeFiles/hpx.dir/util/logging.cpp.o
[ 64%] Building CXX object src/CMakeFiles/hpx.dir/util/manage_config.cpp.o
[ 64%] Building CXX object src/CMakeFiles/hpx.dir/util/map_hostnames.cpp.o
[ 64%] Building CXX object src/CMakeFiles/hpx.dir/util/parse_command_line.cpp.o
[ 67%] Building CXX object src/CMakeFiles/hpx.dir/util/query_counters.cpp.o
[ 67%] Building CXX object src/CMakeFiles/hpx.dir/util/register_locks.cpp.o
[ 67%] Building CXX object src/CMakeFiles/hpx.dir/util/runtime_configuration.cpp.o
[ 67%] Building CXX object src/CMakeFiles/hpx.dir/util/sed_transform.cpp.o
[ 70%] Building CXX object src/CMakeFiles/hpx.dir/util/serialize_exception.cpp.o
[ 70%] Building CXX object src/CMakeFiles/hpx.dir/util/static_reinit.cpp.o
[ 70%] Building CXX object src/CMakeFiles/hpx.dir/util/thread_mapper.cpp.o
[ 72%] Building CXX object src/CMakeFiles/hpx.dir/lcos/barrier/barrier.cpp.o
[ 72%] Building CXX object src/CMakeFiles/hpx.dir/lcos/base_lco.cpp.o
[ 72%] Building CXX object src/CMakeFiles/hpx.dir/lcos/base_lco_with_value.cpp.o
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[ 75%] Building CXX object src/CMakeFiles/hpx.dir/lcos/local/mutex.cpp.o
[ 75%] Building CXX object src/CMakeFiles/hpx.dir/lcos/local/recursive_mutex.cpp.o
[ 75%] Building CXX object src/CMakeFiles/hpx.dir/__/external/backtrace/libs/backtrace/src/backtrace.cpp.o
[ 78%] Building CXX object src/CMakeFiles/hpx.dir/util/coroutine/swapcontext.cpp.o
Linking CXX shared library ../lib/hpx/libhpx.so
.gnu.linkonce.t._ZN3hpx7actions15transfer_actionINS0_14direct_action1INS_4lcos19base_lco_with_valueISt6vectorINS_4agas8responseESaIS7_EES9_EELi1EOS9_XadL_ZNSA_17set_value_nonvirtESB_EENS0_6detail9this_typeEEEED0Ev' referenced in section.gnu.linkonce.r._ZN3hpx7actions15transfer_actionINS0_14direct_action1INS_4lcos19base_lco_with_valueISt6vectorINS_4agas8responseESaIS7_EES9_EELi1EOS9_XadL_ZNSA_17set_value_nonvirtESB_EENS0_6detail9this_typeEEEED0Ev' of CMakeFiles/hpx.dir/hpx_init.cpp.o: defined in discarded section .gnu.linkonce.t._ZN3hpx7actions15transfer_actionINS0_14direct_action1INS_4lcos19base_lco_with_valueISt6vectorINS_4agas8responseESaIS7_EES9_EELi1EOS9_XadL_ZNSA_17set_value_nonvirtESB_EENS0_6detail9this_typeEEEED0Ev' of CMakeFiles/hpx.dir/hpx_init.cpp.o
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hkaiser commented Nov 8, 2012

Please see #601 for a new option allowing to disable the compiler version check for gcc when using the intel compiler.

@ghost ghost assigned brycelelbach Nov 22, 2012
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hkaiser commented Dec 2, 2012

Why have you closed this ticket? Are you sure this is specific to ranger?

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affecting: IU category: CMake type: defect
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