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setup.py
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setup.py
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
try:
from setuptools import setup
except ImportError:
from distutils.core import setup
readme = open('README.rst').read()
history = open('HISTORY.rst').read().replace('.. :changelog:', '')
requirements = [
# TODO: put package requirements here
]
test_requirements = [
# TODO: put package test requirements here
]
setup(
name='nasp',
version='1.2.0',
description='Northern Arizona SNP Pipeline',
long_description=readme + '\n\n' + history,
author='Darrin Lemmer',
author_email='dlemmer@tgen.org',
url='https://github.com/TGenNorth/nasp',
packages=[
'nasp'
#, 'nasp.vtm'
],
package_dir={
'nasp': 'nasp',
},
include_package_data=True,
install_requires=requirements,
license="Academic and Research License",
zip_safe=False,
keywords='nasp',
classifiers=[
'Development Status :: 5 - Production/Stable',
'Environment :: Console',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'Natural Language :: English',
'Operating System :: POSIX',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.3',
'Programming Language :: Python :: 3.4',
'Topic :: Scientific/Engineering :: Bio-Informatics'
],
test_suite='tests',
tests_require=test_requirements,
entry_points = {
'console_scripts': [
'nasp = nasp.nasp:main',
'format_fasta = nasp.format_fasta:main',
'find_duplicates = nasp.find_duplicates:main',
'convert_external_genome = nasp.convert_external_genome:main',
'vcf_to_matrix = nasp.vcf_to_matrix:main',
]
},
scripts = [
'scripts/filter_matrix_by_coord.py',
'scripts/filter_matrix_by_distance.py',
'scripts/filter_matrix_by_genome.py',
'scripts/matrix_to_fasta.py',
'scripts/merge_matrices.py',
'scripts/report_single_snps_single_isolate.py'
]
)