/
sample_ncbi.html
798 lines (743 loc) · 89.5 KB
/
sample_ncbi.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
<!DOCTYPE html>
<html>
<head>
<title>Reference SNP (refSNP) Cluster Report: rs9606708 </title>
<link rel="stylesheet" type="text/css" href="/core/extjs/ext-3.4.2/resources/css/ext-all.css" />
<link rel="stylesheet" type="text/css" href="/core/extjs/ext-3.4.2/resources/css/xtheme-gray.css" id="theme">
<link rel="stylesheet" type="text/css" href="/projects/sviewer/css/style.css" media="screen, projection, print"/>
<link rel="stylesheet" href="CSS/gv.css"/>
<script type='text/javascript' src='common.js'></script>
<script type='text/javascript' src='css.js'></script>
<meta http-equiv="X-UA-Compatible" content="IE=7" />
<meta name="ncbi_sessionid" content="07515F043B31CF4D_0001SID" />
<meta name="ncbi_phid" content="07515F043B31CF4D0000000000011CF4" />
<script type='text/javascript' src='/core/extjs/ext-3.4.2/adapter/ext/ext-base.js'></script>
<script type='text/javascript' src='/core/extjs/ext-3.4.2/ext-all.js'></script>
<script type="text/javascript" src="/projects/sviewer/js/sviewer.js"></script>
<script type="text/javascript" src="/core/jig/1.13/js/jig.min.js"></script>
<script src="Javascripts/jquery.xml2json.js" type="text/javascript"></script>
<script src="Javascripts/gv.js" type="text/javascript"></script>
<script type="text/javascript">
function getURLParameter(name) {
return decodeURIComponent((new RegExp('[?|&]' + name + '=' + '([^&;]+?)(&|#|;|$)').exec(location.search)||[,""])[1].replace(/\+/g, '%20'))||null;
}
// progagate connect param to snp_gene.cgi
var connectStr = getURLParameter('connect');
if (connectStr === null) {
connectStr = '';
}
$J(function(){$J.ajax ({ url:"/projects/SNP/snp_gene.cgi", dataType: 'text', data: {"rs":9606708, "connect":connectStr}, success:function( data, status) {fnProcessResponse (data, status)}, error:function( obj, status, e ){ alert ("error: " + status) }, complete:function(obj, status){ } });});
</script>
<SCRIPT language="javascript" type="text/javascript">
function openPopup(legendURL){
legend=window.open(legendURL,"_blank",
"height=300,width=350,left=300,top=300,scrollbars=1,resizable=1");
}
</SCRIPT>
<!-- #BeginEditable "doctitle" -->
<!-- #EndEditable -->
<meta http-equiv="Content-Type"
content="text/html; charset=iso-8859-1">
<META name="keywords" content="single nucleotide polymorphism, SNP,
sequence variation, genome, gene mapping, population structure, dbSNP,
evolution, microsatellite repeat, phenotype, national center for
biotechnology information, ncbi, national library of medicine, nlm, database,
archive, bioinformatics, national institute of health, ncbi">
<META name="description" content="The Single Nucleotide Polymorphism
database (dbSNP) is a public-domain archive for a broad collection of simple
genetic polymorphisms.">
<META name="author" content="snpdev">
<META name="robots" content="index,nofollow,noarchive">
<meta http-equiv="Expires" content="Wed, 28 Jan 2006 01:01:01 GMT">
<meta name="ncbi_app" content="refSNP" />
<meta name="ncbi_db" content="dbSNP" />
<meta name="ncbi_pcid" content="detailed SNP report" />
<!-- #BeginEditable "MetaRegion" -->
<META name="robots" content="index,nofollow,ARCHIVE">
<META NAME="keywords" CONTENT="SNP, Polymorphism, deletion, insertion, microsatellite, Indel, Haplotype, genotype, population, frequency">
<META NAME="description" CONTENT="Database of Single Nucleotide Polymorphism">
<!-- #EndEditable -->
<script language="JavaScript" src="http://www.ncbi.nlm.nih.gov:80/corehtml/query/query.js"></script>
<script language="JavaScript" src="Javascripts/snputils.js"></script>
<script src="Javascripts/prototype.js" type="text/javascript"></script>
<script language="JavaScript" src="Javascripts/cookies.js"></script>
<script language="JavaScript" src="Javascripts/sidebar.js"></script>
<link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css">
<link rel="stylesheet" href="snp.css" type="text/css">
<link type="text/css" rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi_test.css">
<link rel="stylesheet" href="CSS/gv.css"/>
<!-- #BeginEditable "JAVASCRIPT" -->
<script language="JavaScript" src="snpEntrez.js"></script>
<SCRIPT language="JavaScript">
//JAVASCRIPTS start here
function TaxID()
{
taxnum = document.freeform.TAXID.options[document.freeform.TAXID.selectedIndex].value;
querystr = document.freeform.querytext.value;
querystr = querystr + "[TAX_ID]=" + taxnum;
document.freeform.querytext.value = querystr;
}
function getSubID()
{
selection = document.searchID.Type;
gettype = selection.options[selection.selectedIndex].value;
b = document.searchID.sub_id.value;
if (gettype == "dbSNP_rs")
{
var numstr = /rs\d+$/;
if (!(b.match(numstr)) ) {
alert (b + " is incorrect format!\nThe ID should have the prefix \"rs\" and a number \n (eg. rs23131)");
return false;}
}
if (gettype == "dbSNP_ss")
{
var numstr = /ss\d+$/;
if (!(b.match(numstr)) ) {
alert (b + " is incorrect format!\nThe ID should have the prefix \"ss\" and a number \n (eg. ss23131)");
return false;}
}
}
function getSTSname()
{
if ((document.STSSearch.STSname1.value == "") || (document.STSSearch.STSname2.value == ""))
{
alert("Please enter two STS markers!")
document.STSSearch.STSname1.focus();
return false;
}
else
{
return true;
}
}
</SCRIPT>
<style type="text/css">
<!--
.style1 {color: #0000FF}
-->
</style>
<!-- #EndEditable -->
<script type="text/javascript" language="JavaScript">
<!--
if (document.layers) { origWidth = window.innerWidth; origHeight = window.innerHeight; window.onresize = resizeFix; }
function resizeFix() {
if (document.layers && (window.innerWidth != origWidth || window.innerHeight != origHeight)) { window.history.go(0); }
}
// -->
</script>
<script language="JavaScript1.2">
<!--
var PopUpMenu2_GlobalConfig = [
["UseThisGlobalConfig","yes"]
]
//-->
</script>
<script language="JavaScript1.2" src="/coreweb/javascript/popupmenu2/popupmenu2_7loader.js"></script>
</head>
<body bgcolor="#FFFFFF" background="bkgd.gif" text="#000000" link="#CC6600" vlink="#CC6600" onLoad="">
<!-- #BeginEditable "DHTML Items" --><!-- #EndEditable -->
<!-- the header -->
<!--start of first table --><!-- #BeginLibraryItem "/Library/dbSNP_topbar.lbi" -->
<style type="text/css">
<!--
.style1 {color: #FF0000}
.style2 {
font-size: 18px;
font-weight: bold;
}
-->
</style>
<img src="#maincontent" width="100%" height="1" alt="Skip to main content">
<table width="615" border="0" cellpadding="0" cellspacing="0">
<tr>
<!-- logo -->
<td><table width="100%" border="0" cellpadding="0" cellspacing="0">
<tr>
<td width="135" align="left" bgcolor="#336699"><a href="http://www.ncbi.nlm.nih.gov"><img src="corehtml/left.GIF" width="130" height="45" border="0" alt="NCBI"></a><br>
</td>
<td align="left"><!-- #BeginLibraryItem "/Library/SNPlogo.lbi" --><img name="SNPlogo" src="Images/SNPlogo2_ver2.jpg" width="440" height="70" border="0" alt="dbSNP"><!-- #EndLibraryItem --><!-- #BeginLibraryItem "/Library/Alert.lbi" --><!-- #EndLibraryItem --></p></td>
</tr>
</table></td>
</tr>
<tr>
<!--site map-->
<td><table class="TEXT" border="0" cellspacing="0" cellpadding="2" bgcolor="#000000" width="100%">
<tr class="TEXT" align="CENTER">
<td><a href="/entrez/query.fcgi?db=PubMed" class="topbarHeading"><font color="#FFFFFF">PubMed</font></a></td>
<td><a href="/entrez/query.fcgi?db=Nucleotide" class="topbarHeading"><font color="#FFFFFF">Nucleotide</font></a></td>
<td><a href="/entrez/query.fcgi?db=Protein" class="topbarHeading"><font color="#FFFFFF">Protein</font></a></td>
<td><a href="/entrez/query.fcgi?db=Genome" class="topbarHeading"><font color="#FFFFFF">Genome</font></a></td>
<td><a href="/entrez/query.fcgi?db=Structure" class="topbarHeading"><font color="#FFFFFF">Structure</font></a></td>
<td><a href="/entrez/query.fcgi?db=Popset" class="topbarHeading"><font color="#FFFFFF">PopSet</font></a></td>
<td><a href="/entrez/query.fcgi?db=Taxonomy" class="topbarHeading"><font color="#FFFFFF">Taxonomy</font></a></td>
<td><a href="/entrez/query.fcgi?db=OMIM" class="topbarHeading"><font color="#FFFFFF">OMIM</font></a></td>
<td><a href="/entrez/query.fcgi?db=Books" class="topbarHeading"><font color="#FFFFFF">Books</font></a></td>
<td><a href="/entrez/query.fcgi?db=Snp" class="topbarHeading"><font color="#FFFFFF">SNP</font></a></td>
</tr>
</table></td>
</tr>
<tr>
<!--query box-->
<td><table border="0" width="100%" cellspacing="0" cellpadding="2" bgcolor="#ccccff">
<form action="http://www.ncbi.nlm.nih.gov/coreutils/dispatch.cgi" method="post" name="Search" id="Search">
<tbody>
<tr>
<td class="SMALL1"><div id="HintEntrezSnp" class="hintBox">Search for SNP on NCBI Reference Assembly</div><label for="Search"> Search Entrez</label>
<small>
<select name="db">
<option value="500">All Databases</option>
<option value="17">NCBI Web Site</option>
<option value="00">-------------</option>
<option value="0">PubMed</option>
<option value="1">Protein</option>
<option value="2">Nucleotide</option>
<option value="37">EST</option>
<option value="38">GSS</option>
<option value="3">Structure</option>
<option value="4">Genome</option>
<option value="8">Books</option>
<option value="23">CancerChromosomes</option>
<option value="14">Conserved Domains</option>
<option value="10">3D Domains</option>
<option value="21">Gene</option>
<option value="30">Genome Project</option>
<option value="34">dbGaP</option>
<option value="28">GENSAT</option>
<option value="19">GEO Profiles</option>
<option value="20">GEO Datasets</option>
<option value="22">HomoloGene</option>
<option value="15">Journals</option>
<option value="18">MeSH</option>
<option value="24">NLM Catalog</option>
<option value="33">OMIA</option>
<option value="6">OMIM</option>
<option value="16">PMC</option>
<option value="5">PopSet</option>
<option value="29">Probe</option>
<option value="35">Protein Clusters</option>
<option value="25">PubChem BioAssay</option>
<option value="26">PubChem Compound</option>
<option value="27">PubChem Substance</option>
<option value="13" selected>SNP</option>
<option value="7">Taxonomy</option>
<option value="11">UniGene</option>
<option value="12">UniSTS</option>
</select>
</small>
<label for="term">for</label>
<input type="text" name="term" id="term" alt="search term" size="24">
<input type="submit" name="submit" value="Go">
<input type="hidden" name="SITE" value="NcbiHome"></td>
</tr>
</tbody>
</form>
</table></td>
</tr>
<tr>
<td><table width="615" border="0" cellpadding="0" cellspacing="0">
<tr>
<td width="153" bgcolor="#CCCCCC"><img src="corehtml/transparent.gif" width="130" height="1" alt="transparent GIF"></td>
<td width="462" bgcolor="#CCCCCC"><!-- toolbar -->
</td>
</tr>
</table></td>
</tr>
</table>
<!-- #EndLibraryItem --><!--end of first table -->
<!-- the contents -->
<table summary="" border="0" width="615" cellspacing="0" cellpadding="0">
<tr valign="TOP">
<!-- left column -->
<td
width="135" valign="top" bgcolor="#336699"> <span class="GUTTER1"></span> <img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.GIF"
width="135" height="1" border="0" alt="Spacer gif"><!-- #BeginLibraryItem "/Library/dbSNP_sidebar.lbi" -->
<link href="CSS/snp.css" rel="stylesheet" type="text/css">
<style type="text/css">
<!--
.roundcont {
background-color: #f90;
color: #fff;
width: 120px;
}
.roundcont p {
margin: 0 10px;
}
.roundtop {
background: url(./css_images/tr.gif) no-repeat right top;
}
.roundbottom {
background: url(./css_images/br.gif) no-repeat top right;
}
img.corner {
width: 15px;
height: 15px;
border: none;
display: block;
}
-->
</style>
<table width="100%">
<tr>
<td>
<div align="center"></div>
<div align="center"><!-- #BeginLibraryItem "/Library/FAQ search box.lbi" -->
<div class="roundcont">
<div class="faqtitle">Have a question about dbSNP? Try searching the SNP FAQ Archive!</div>
<form name="frmGo" method="get" action="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi" onSubmit="searchFAQ(this);">
<input name="db" value="Books" type="hidden">
<input name="cmd" value="Search" type="hidden">
<input name="term" value="" alt="FAQ search Term" size="12">
<input type="submit" name="Submit" value="Go">
<input name="doptcmdl" value="TOCView" type="hidden">
</form>
<script language="JavaScript" type="text/JavaScript">
<!--
function searchFAQ (frm) {
frm.term.value += ' AND helpsnpfaq[book]';
}
-->
</script>
</div> <!-- #EndLibraryItem --></div><div class="sidebarDiv" id="sideBar">
<p>
<div class="sidebarHeading" id="divGeneral" onClick="toggleSideBar(this);" onKeyPress="toggleSideBar(this);">GENERAL</div>
<div class="sidebarSubHeadingDiv" id="divGeneralContent">
<a accesskey="R" href="http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=dbsnpnews">RSS Feed</a><a href="http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=dbsnpnews"><img src="Images/rss.gif" alt="RSS" border="0"></a><br>
<a accesskey="A" href="javascript:Help();" >Contact Us</a><br>
<a accesskey="C" href="index.html">dbSNP Homepage</a><br>
<a accesskey="D" href="http://www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce">Announcements</a><BR>
<a accesskey="E" href="snp_summary.cgi">dbSNP Summary</a><BR>
<a accesskey="F" href="ftp://ftp.ncbi.nih.gov/snp/">FTP Download</a>
</div>
<div class="sidebarHeading" id="divHumanVariations" onClick="toggleSideBar(this);" onKeyPress="toggleSideBar(this);">HUMAN VARIATION</div>
<div class="sidebarSubHeadingDiv" id="divHumanVariationsContent">
<a accesskey="G" href="tranSNP/tranSNP.cgi" title="Search for variation in the human genome using HGVS nomenclature with an opportunity to submit new or annotate existing information ">Search, Annotate, Submit</a><span class="sidebarHeading"></span><br>
<a accesskey="H" href="tranSNP/VarBatchSub.cgi" title="Submit multiple variants using HGVS nomenclature with an opportunity to identify their clinical relevance">Annotate and Submit Batch Data with Clinical Impact</a><span class="sidebarHeading"></span><br>
<a accesskey="R" href="docs/rs_attributes.html" title="New RS Attributes for filtering variations">Attributes for Filtering Variation</a><span class="sidebarHeading"></span><br>
</div>
<div class="sidebarHeading" id="divSubmission" onClick="toggleSideBar(this);" onKeyPress="toggleSideBar(this);">SNP SUBMISSION</div>
<div class="sidebarSubHeadingDiv" id="divSubmissionContent">
<!-- <a accesskey="I" href="/books/NBK21088/">Quick Start</a><br> -->
<a accesskey="J" href="how_to_submit.html">How to Submit</a><br>
<a accesskey="V" href="docs/dbSNP_VCF_Submission.pdf">VCF Submission</a><img src="new.gif" width="25" height="12" alt="NEW gif"><br>
<a accesskey="K" href="handle.html">Handle Request</a><br>
</div>
<div class="sidebarHeading" id="divDocumentation" onClick="toggleSideBar(this);" onKeyPress="toggleSideBar(this);">DOCUMENTATION</div>
<div class="sidebarSubHeadingDiv" id="divDocumentationContent">
<a accesskey="S" href="ftp://ftp.ncbi.nih.gov/pub/factsheets/Factsheet_SNP.pdf">dbSNP Fact Sheet</a><img src="new.gif" width="25" height="12" alt="NEW gif"><BR>
<a accesskey="L" href="/mailman/mmsearch/dbsnp-announce?restrict=;exclude=;config=dbsnp-announce;method=or;format=short;sort=time;words=build;page=1">Build Release Note</a><br>
<a accesskey="M" href="buildhistory.cgi">Build History</a><br>
<a accesskey="N" href="/books/NBK3848/" title="Search SNP archived FAQ updated to 2006">Search FAQ Archive</a><br>
<a accesskey="O" href="/books/NBK174586/">dbSNP Handbook</a><br>
<a accesskey="P" href="get_html.cgi?whichHtml=overview">Overview</a><br>
<a accesskey="S" href="ftp://ftp.ncbi.nih.gov/snp/database/b124/mssql/schema/erd_dbSNP.pdf">Database Schema</a><br>
<a accesskey="T" href="snp_db_list_table.cgi">Database Dictionary</a><br>
<a acceskey="U" href="snp_schemaChange.htm">Database Changes</a><br>
<a acceskey="V" href="geno/genoex_doc.html">Genotype Schema</a><br>
<a acceskey="W" href="ftp://ftp.ncbi.nih.gov/snp/00readme.txt">Data Formats</a><BR>
<a acceskey="X" href="docsum/docsum_doc.html">Docsum Schema</a><BR>
<a acceskey="Y" href="Hetfreq.html">Heterozygosity Computation</a>
</div>
<div class="sidebarHeading" id="divSearch" onClick="toggleSideBar(this);" onKeyPress="toggleSideBar(this);">SEARCH</div>
<div class="sidebarSubHeadingDiv" id="divSearchContent">
<p><a acceskey="Z" href="/entrez/query.fcgi?db=Snp">Entrez SNP</a><br>
<a acceskey="1" href="SNPeutils.htm">EUtils API</a><br>
<a accesskey="2" href="SNPBlast.html">Blast SNP</a><br>
<a accesskey="3" href="batchquery.html">Batch Query</a><BR>
<a accesskey="6" href="snp_tableList.cgi?type=submitter">By Submitter</a><BR>
<a accesskey="7" href="snp_batchSearch.cgi?init=y">New Batches</a><BR>
<a accesskey="8" href="snp_tableList.cgi?type=method">Method</a><br>
<a accesskey="9" href="snp_tableList.cgi?type=pop">Population Detail</a><br>
<!-- <a accesskey="Q" href="../popclass.cgi">Population Class</a><br> -->
<a accesskey="]" href="snp_tableList.cgi?type=pub">Publication</a><br>
</p>
</div>
<!--
<div class="sidebarHeading" id="divHaplotype" onClick="toggleSideBar(this);" onKeyPress="toggleSideBar(this);">HAPLOTYPE</div>
<div class="sidebarSubHeadingDiv" id="divHaplotypeContent">
<a href="../hap/dbSNP_haplotype_intro.html">Submission</a>
</div>
-->
<div class="sidebarHeading" id="divRelatedSites" onClick="toggleSideBar(this);" onKeyPress="toggleSideBar(this);">RELATED SITES</div>
<div class="sidebarSubHeadingDiv" id="divRelatedSitesContent">
<a accesskey="=" href="/variation/">NCBI Variation resources</a><br>
</div>
</div>
</td>
</tr>
</table>
<script language="JavaScript" type="text/JavaScript">
toggleSideBar($('divHumanVariations'));
//toggleSideBar($('divGeneral'));
</script>
<noscript>See Human Variations Search</noscript><!-- #EndLibraryItem --><SPAN class="GUTTER1"><BR>
</SPAN> </td>
<!-- extra column to force things over the gif border -->
<td width="5"> <img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.GIF"
width="3" height="1" border="0" alt="Spacer gif"> </td>
<!-- right content column -->
<!-- #BeginEditable "SNP_right column" -->
<td>
<table
border="0" width="460" cellspacing="2" cellpadding="0" bgcolor="#FFFFFF">
</table>
<div align="center">
<table width="100%" border="0" cellpadding="1">
<tr bgcolor="#336699">
<td colspan="6" bgcolor="#CCCCFF">
<td style="text-align:left;background-color:#CCCCFF;weight:bold"><b>Reference SNP (refSNP) Cluster Report: rs9606708 </b><span style="color:red"><b></b></span></td>
</tr></table>
<TABLE>
<TR><TD><!--end of printTemplateTop-->
<TABLE border="0"><TR valign="top"><td ><TABLE id="RefSNP" cellpadding="2" width="350" ><TH class="text10" bgcolor="#ccccff" align="center" colspan="2">RefSNP</TH><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Organism:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">human (<a href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606"><em>Homo sapiens</em></a>)</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Molecule Type:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">Genomic</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Created/Updated in build:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">119/141</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Map to Genome Build:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1"><a href="http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=9606">106</a>/<a title="dbSNP Mapping Weight (1=unique position)" href="http://www.ncbi.nlm.nih.gov/books/NBK44455/#Build.Mapping_Weight">Weight </a></td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong><a href="/projects/SNP/snp_legend.cgi?legend=validation">Validation Status:</a></strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1"><IMG border="0" height="17" src="gif/val_cluster.gif" alt="byCluster" width="15"><IMG border="0" height="17" src="gif/val_freq.gif" alt="byFreq" width="15"><IMG border="0" height="17" src="gif/val_2hit.gif" alt="with2hit" width="15"><IMG border="0" height="17" src="gif/val_hapmap.gif" alt="withHapMapFreq" width="15"><IMG border="0" height="17" src="gif/val_1000G.gif" alt="With1000GenomeData" width="15"></td></TR></TABLE></td><td ><TABLE id="Allele" cellpadding="2" width="350" ><TH class="text10" bgcolor="#ccccff" align="center" colspan="2">Allele</TH><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong><a href="javascript:openPopup("snp_legend.cgi?legend=snpClass");">Variation Class:</a></strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">SNV:<BR> single nucleotide variation</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>RefSNP Alleles:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">G/T (<span title="rs9606708 alleles are reported in forward orientation to genome">FWD</span>)</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Allele Origin:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1"> </td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Ancestral Allele:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">G</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Clinical Channel:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">unknown</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Clinical Significance:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">NA</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong><a href="http://www.ncbi.nlm.nih.gov/projects/SNP/docs/rs_attributes.html#gmaf">MAF/MinorAlleleCount:</a></strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1"><span title="reported on genome orientation">T=0.292/637</span></td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>MAF Source:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">1000 Genomes</td></TR></TABLE></td><td ><TABLE id="HGVS Names" cellpadding="2" width="200" ><TH class="text10" bgcolor="#ccccff" align="center" colspan="1">HGVS Names</TH><TR ><td><div class="jig-ncbiexpander" style="width:300px;height:200px;" data-jigconfig="auto:false,minHeight:'160px'"><ul class="dd_list"><li style="background-color:#f1f1f1">NC_000022.11:g.30250137G>T</li><li style="background-color:#f1f1f1">NG_008721.1:g.1671C>A</li><li style="background-color:#f1f1f1">NT_011520.13:g.11540573G>T</li><li style="background-color:#f1f1f1">XM_006724240.1:c.-102-3340C>A</li></ul></div></td></TR></TABLE></td><td ><TABLE ><TR ><td ><SPAN><script language="JavaScript1.2">
<!--
var PopUpMenu2_LocalConfig_jsmenu3Config = [
["ShowCloseIcon","yes"],
["Help","window.open('/entrez/query/static/popup.html','Links_Help','resizable=no,scrollbars=yes,toolbar=no,location=no,directories=no,status=no,menubar=no,copyhistory=no,alwaysRaised=no,depend=no,width=400,height=500');"],
["TitleText"," Links "]
]
var jsmenu3Config = [
["UseLocalConfig","jsmenu3Config","",""]
]
//-->
</script>
<script language="JavaScript1.2">
<!--
var Menu17875217 = [
["UseLocalConfig","jsmenu3Config","",""],
["EntrezSNP","window.top.location='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=snp&cmd=search&term=rs9606708'","",""],
["Probe","window.top.location='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=snp&cmd=Display&dopt=snp_probe&from_uid=9606708'","",""],
["Ensembl","window.top.location='http://www.ensembl.org/Homo_sapiens/snpview?snp=rs9606708&source=dbSNP'","",""],
["UC Santa Cruz","window.top.location='http://genome.ucsc.edu/cgi-bin/hgTracks?position=rs9606708'","",""],
]
//-->
</script>
<a class="dblinks" href="javascript:PopUpMenu2_Set(Menu17875217);"
onMouseOut="PopUpMenu2_Hide();" TARGET="_self">Links</a>
</SPAN>
</td><td ><a class="dblinks" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=gene_full_report&cmd=Retrieve&db=snp&list_uids=9606708&dopt=ExternalLink">, Linkout</a> </td></TR></TABLE></td></TR></TABLE><div style="text-align:left">SNP Details are organized in the following sections:</div>
<TABLE cellspacing ="1" >
<TR bgcolor="#CCCCFF" align="center">
<td style="color:white" width="80"><a href="#locus">GeneView</a></td>
<td style="color:white" width="80"><a href="#map">Map</a></td>
<td style="color:white" width="80" ><a href="#submission" name="maintab">Submission</a></td>
<td style="color:white" width="80"><a href="#fasta">Fasta</a></td>
<td style="color:white" width="80"><a href="#resource">Resource</a></td>
<td style="color:white" width="80"><a href="#Diversity">Diversity</a></td>
<td style="color:white" width="80"><a href="#validation">Validation</a></td>
</TR></TABLE>
<BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="map"><strong>Integrated Maps (Hint: click on 'Chr Pos' or 'Contig Pos' column value to see variation in NCBI sequence viewer)</strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE> <div id="imaps-idle" class="ajax-idle"></div>
<div id="imaps-result" class="indent jig-ncbigrid" style="width: 1000px; display: none">
<div class="ui-ncbigrid-inner-div">
<!--table class="annot-table" style="font-size: 11px; margin-left: 0px; margin-right:0px"-->
<table style="text-align: center; margin-left: 0px; margin-right:0px" data-jigconfig="isSortable: true, columnTypes: ['num', 'str', 'num', 'str', 'num', 'none', 'none', 'none', 'fnc:assemblySort', 'none', 'none']">
<!--caption style="text-align: center">Integrated Maps</caption-->
<thead>
<tr class="wrap-header">
<th title="Assembly" style="width:15px">Assembly</th>
<th title="Genome Build ID" style="width:70px">Genome<br>Build</th>
<th title="Chromosome ID" style="width:50px">Chr</th>
<th title="Chromosome Position" style="width:100px">Chr Pos</th>
<th title="Contig Accession" style="width:60">Contig</th>
<th title="Contig Position" style="width:70">Contig Pos</th>
<th title="SNP to Contig Orientation" style="width:10px">SNP to<br/>Chr</th>
<th title="Contig Allele" style="width:10px">Contig<br/>allele</th>
<th title="Contig to Chromosome Orientation" style="width:10px">Contig to<br/>Chr</th>
<!--th title="Assembly Type" style="width:70px">Group<br>term</th>
<th title="Group Label" style="width:10px">Group<br>label</th>
<th title="Contig Label" style="width:10px">Contig<br>label</th-->
<th title="Neighbor SNP" style="width:10px">Neighbor<br/>SNP</th>
<th title="SNP Map Method" style="width:10px">Map Method</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table>
</div>
<div id="imaps-sv"></div>
</div>
<div id="imaps-no-result" class="indent" style="display: none">
<span tmpl="rs"></span> doesn't map to any assembly.
</div>
<BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="locus"><strong>GeneView </strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE> <div id="gv-idle" class="ajax-idle"></div>
<div id="gv-result" style="display: none">
<div id="ext-rsg" class="indent" style="display: none">
<div class="jig-ncbigrid" style="width: 1000px">
<div class="ui-ncbigrid-inner-div">
<!--table id="gv-table-ng" class="annot-table"-->
<table id="ext-table-rsg">
<caption>RefSeqGene Mapping</caption>
<thead>
<tr>
<th>RefSeqGene</th>
<th>Gene (ID)</th>
<th>SNP to RefSeqGene</th>
<th>Position</th>
<th>Allele</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table>
</div>
</div>
</div>
<div id="gv-gene-container" style="display: none">
<!-- Repeat the folowing section for each gene -->
<!--BEGIN gene section -->
<div id="gv-gene" >
<!--h4><span tmpl="rs"></span> is annotated on the gene <span tmpl="gene"></span></h4-->
<h4 style="text-align:left">GeneView via analysis of contig annotation: <span tmpl="gene"></span> <span class="note" tmpl="geneDescription"></span></h4>
<!-- gene model form. hide by default -->
<div style="text-align:left" id="gv-opt" class="expand indent">View more variation on this gene (click to hide).</div>
<div style="text-align:left" id="gv-form" class="indent indent">
<!--b>View variations for gene:</b-->
<form method="get" action="/projects/SNP/snp_ref.cgi" enctype="application/x-www-form-urlencoded">
<input name="showRare" title="Clinically associate snp is one with OMIM ID, or from LSDB or Clinical Diagnostic Assay." type="checkbox" checked="yes" id="show_rare_chk_box">
<label for="show_rare_chk_box"><span name="clin-checkbox-text">Clinical Source:</span></label>
<input type="radio" name="chooseRs" value="all" id="chooseRs_all" />
<label for="chooseRs_all">in gene region</label>
<input type="radio" name="chooseRs" value="coding" checked="checked" id="chooseRs_coding">
<label for="chooseRs_coding">cSNP</label>
<input type="radio" name="chooseRs" value="het" id="chooseRs_het" />
<label for="chooseRs_het">has frequency</label>
<input type="radio" name="chooseRs" value="doublehit" id="chooseRs_doublehit" />
<label for="chooseRs_doublehit">double hit</label>
<input name="go" value="Go" type="submit">
<input name="locusId" value="" type="hidden">
</form>
</div>
<div class="indent">
<!--h4>Functional annotation</h4-->
<div id="gv-detail" style="margin-top: 1em; margin-bottom: 1em">
<div class="jig-ncbigrid" style="width: 1000px">
<div class="ui-ncbigrid-inner-div">
<!--table id="gv-table-g" class="annot-table" style="font-size: 12px"-->
<table id="gv-table-g">
<caption>Primary Assembly Mapping</caption>
<thead>
<tr>
<th>Assembly</th>
<th>SNP to Chr</th>
<th>Chr</th>
<th>Chr position</th>
<th>Contig</th>
<th>Contig position</th>
<th>Allele</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table>
</div>
</div>
<p/>
<!-- place holder for NG table -->
<div class="jig-ncbigrid" style="margin-top: 1em; margin-bottom: 1em; width: 1000px;">
<div class="ui-ncbigrid-inner-div">
<!--table id="gv-table-ng" class="annot-table"-->
<table id="gv-table-rsg">
<caption>RefSeqGene Mapping</caption>
<thead>
<tr>
<th>RefSeqGene</th>
<th>Gene (ID)</th>
<th>SNP to RefSeqGene</th>
<th>Position</th>
<th>Allele</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table>
</div>
</div>
<p/>
<div class="jig-ncbigrid" style="width: 1000px">
<div class="ui-ncbigrid-inner-div">
<!--table id="gv-table" class="annot-table func-table" style="font-size: 12px"-->
<table id="gv-table">
<caption>Gene Model(s)<caption>
<thead>
<tr>
<th rowSpan="2" class="func">Function</th>
<th colSpan="4" class="mrnaT">mRNA</th>
<th colSpan="3" class="proteinT">Protein</th>
</tr>
<tr>
<th title="mRNA to contig orientation" class="mrna">SNP to mRNA</th>
<th class="mrna">Accession</th>
<th class="mrna">Position</th>
<th nowrap="nowrap" class="mrna">Allele change</th>
<th class="protein">Accession</th>
<th class="protein">Position</th>
<th nowrap="nowrap" class="protein">Residue change</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table>
</div>
</div>
</div>
</div>
<div style="font-weight:bold;margin-top:1em; display: none"><span tmpl="gene"></span> on <span tmpl="assembly"></span> assembly: <span tmpl="rs"></span> is labeled at position <span tmpl="chrPosFrom"></span> on chromosome <span tmpl="chr"></span>.</div>
<div id="gv-geneview-image" class="indent"></div>
</div>
<!--END gene section -->
</div> <!-- gv-gene-container -->
</div>
<!--div id="gv-no-result" class="indent"><h4><span tmpl="rs"></span> is not annotated on any gene</h4></div-->
<div id="gv-no-result" class="indent NA" style="display: none"><h4>GeneView via analysis of contig annotation: N/A.</div>
<div id="blast-result" style="display: none">
<div id="blast-gene-container">
<!-- Repeat the folowing section for each mRNA hit -->
<!--BEGIN blast section -->
<div id="blast-gene" class="indent">
<h4>GeneView via direct blast against RefSeq sequences (used when no gene model is available): <span tmpl="gene"></span> <span class="note" tmpl="geneDescription"></span></h4>
<!--div class="note">(Direct blast is used when the SNP doesn't align with mRNA and/or the mRNA doesn't align with contig.)</div-->
<div id="blast-detail">
<!--table id="blast-table-g" class="annot-table">
<thead>
<tr>
<th>Assembly</th>
<th>Chromosome</th>
<th>Chromosome position</th>
<th>Contig</th>
<th>Contig position</th>
<th>Allele</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table-->
<div class="jig-ncbigrid" config="width: 800">
<div class="ui-ncbigrid-inner-div">
<table id="blast-table" style="font-size: 12px">
<thead>
<tr>
<th rowSpan="2" class="func">Function</th>
<!--th rowSpan="2" class="func">Chr</th-->
<th colSpan="4" class="mrnaT">mRNA</th>
<th colSpan="3" class="proteinT">Protein</th>
</tr>
<tr>
<th title="SNP to mRNA orientation" class="mrna">SNP to mRNA</th>
<th class="mrna">Accession</th>
<th class="mrna">Position</th>
<th nowrap="nowrap" class="mrna">Allele change</th>
<th class="protein">Accession</th>
<th class="protein">Position</th>
<th nowrap="nowrap" class="protein">Residue change</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table>
</div>
</div>
</div>
<div style="font-weight:bold;margin-top:1em; display: none"><span tmpl="gene"></span> on <span tmpl="assembly"></span> assembly: <span tmpl="rs"></span> is labeled at position <span tmpl="chrPosFrom"></span> on chromosome <span tmpl="chr"></span>.</div>
<div id="blast-geneview-image"></div>
</div>
<!--END blast section -->
</div>
</div>
<!--div id="blast-no-result" class="indent"><span tmpl="rs"></span> no link established by BLAST analysis on RefSeq mRNA sequences.</div-->
<div style="text-align:left" id="blast-no-result" class="indent NA" style="display: none"><h4>GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A</h4>
<!--div class="note">(Direct blast is used when the SNP doesn't align with mRNA and/or the mRNA doesn't align with contig.)</div-->
</div>
<BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="submission"><strong>Submitter records for this RefSNP Cluster</strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE><div style="text-align:left">The submission <strong>ss283619008</strong> has the longest flanking sequence of all cluster members and was used to instantiate sequence for <strong>rs9606708</strong> during BLAST analysis for the current build.</div><BR><BR><TABLE id="Submission"><TR ><TH bgcolor="silver">NCBI<br>Assay ID</TH><TH bgcolor="silver">Handle|Submitter ID</TH><TH bgcolor="silver"><a href="javascript:openPopup("snp_legend.cgi?legend=validation")">Validation<br>Status</a></TH><TH bgcolor="silver"><a href="ftp://ftp.ncbi.nih.gov/snp/database/Illumina_top_bot_strand.note.txt">ss to rs<BR>Orientation<BR>/Strand</a></TH><TH bgcolor="silver">Alleles</TH><TH bgcolor="silver">5' Near Seq 30 bp</TH><TH bgcolor="silver">3' Near Seq 30 bp</TH><TH bgcolor="silver">Entry<BR>Date</TH><TH bgcolor="silver">Update<BR>Date</TH><TH bgcolor="silver">Build<BR>Added</TH><TH bgcolor="silver">Molecule<BR>Type</TH><TH bgcolor="silver">Freq<BR>Warning</TH><TH bgcolor="silver">Ancestral<BR>Allele</TH><TH bgcolor="silver">Success<BR>Rate</TH></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=13348127">ss13348127</a></td><td >SC_SNP|NT_011520.9_10036695</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >10/22/03</td><td >10/31/03</td><td >119</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=16928500">ss16928500</a></td><td >CSHL-HAPMAP|CSHL-HuAA-200402.chr22.NT_011520.9_10036695</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >02/17/04</td><td >03/04/04</td><td >120</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=21854556">ss21854556</a></td><td >SSAHASNP|WGSA-200403-chr22.chr22.NT_011520.9_10036695</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >03/20/04</td><td >03/20/04</td><td >121</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=41545403">ss41545403</a></td><td >ABI|hCV2624328</td><td ><IMG border="0" height="17" src="gif/val_freq.gif" alt="byFreq" width="15"></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >07/17/05</td><td >11/03/06</td><td >126</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=66568309">ss66568309</a></td><td >ILLUMINA|HumanHap300v1.1_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >11/09/06</td><td >11/09/06</td><td >127</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=67935959">ss67935959</a></td><td >ILLUMINA|HumanHap550v1.1_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >11/14/06</td><td >11/15/06</td><td >127</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=68053991">ss68053991</a></td><td >ILLUMINA|HumanHap650Yv1.0_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >11/14/06</td><td >11/15/06</td><td >127</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=69274569">ss69274569</a></td><td >PERLEGEN|PGP06257470</td><td ><IMG border="0" height="17" src="gif/val_freq.gif" alt="byFreq" width="15"></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >01/30/07</td><td >03/31/08</td><td >127</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=71618716">ss71618716</a></td><td >ILLUMINA|HumanHap650Yv3.0_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >04/23/07</td><td >04/23/07</td><td >127</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=75547400">ss75547400</a></td><td >ILLUMINA|ILMN_Human_1M_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >08/28/07</td><td >08/29/07</td><td >129</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=79301290">ss79301290</a></td><td >ILLUMINA|HumanHap300v2.0_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >04/18/07</td><td >11/18/07</td><td >130</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=84843335">ss84843335</a></td><td >KRIBB_YJKIM|KHS826968</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >12/04/07</td><td >12/08/07</td><td >130</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=91903157">ss91903157</a></td><td >BCMHGSC_JDW|JWB-1520110</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >02/26/08</td><td >03/02/08</td><td >129</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=96097413">ss96097413</a></td><td ><a href="http://huref.jcvi.org/browse.html?search=1103691027931">HUMANGENOME_JCVI|1103691027931</a></td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >03/25/08</td><td >03/25/08</td><td >130</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=98277626">ss98277626</a></td><td >ILLUMINA|HumanHap550v3.0__rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >04/20/07</td><td >03/31/08</td><td >130</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=106223689">ss106223689</a></td><td >BGI|BGI_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >09/13/08</td><td >06/18/09</td><td >130</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=112606151">ss112606151</a></td><td >1000GENOMES|CEU.trio.12.15.2008_3798970_chr22_28976126</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >12/17/08</td><td >12/17/08</td><td >130</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=123021296">ss123021296</a></td><td >ILLUMINA|HumanCNV370v1_C_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >04/14/09</td><td >04/15/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=138346539">ss138346539</a></td><td >ENSEMBL|ENSSNP11918354</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >05/15/09</td><td >05/17/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=143491661">ss143491661</a></td><td >ENSEMBL|ENSSNP8495803</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >12/08/08</td><td >10/19/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=154503753">ss154503753</a></td><td >ILLUMINA|Human610_Quadv1_B_rs9606708-128_B_F_1501894466</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >06/18/09</td><td >06/20/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=157122119">ss157122119</a></td><td >GMI|GMI_SNP_24526442</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >06/24/09</td><td >06/25/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=159677621">ss159677621</a></td><td >ILLUMINA|Human660W-Quad_v1_A_rs9606708-128_B_F_1501894466</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >07/06/09</td><td >07/07/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=161003304">ss161003304</a></td><td >ILLUMINA|HumanOmni1-Quad_v1-0_B_rs9606708-128_B_F_1501894466</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >08/04/09</td><td >10/05/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=172486366">ss172486366</a></td><td >ILLUMINA|HumanCNV370-Quadv3_C_rs9606708-128_B_F_1501894466</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >10/01/09</td><td >10/04/09</td><td >132</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=174876723">ss174876723</a></td><td >ILLUMINA|Human1M-Duov3_B_rs9606708-128_B_F_1501894466</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >10/01/09</td><td >10/05/09</td><td >132</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=208844766">ss208844766</a></td><td >BCM-HGSC-SUB|BCM_CMT_1011-3300201</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >03/15/10</td><td >03/20/10</td><td >132</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=238051055">ss238051055</a></td><td >1000GENOMES|pilot_1_CEU_7655684_chr22_28976126</td><td ></td><td >fwd/</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >05/01/10</td><td >05/01/10</td><td >132</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=244174526">ss244174526</a></td><td >1000GENOMES|pilot_1_CHB+JPT_6059603_chr22_28976126</td><td ></td><td >fwd/</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >05/01/10</td><td >05/01/10</td><td >132</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><strong><a href="snp_ss.cgi?subsnp_id=283619008">ss283619008</a></strong></td><td >GMI|GMI_AK_SNP_7939429</td><td ></td><td >fwd/</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >12/16/10</td><td >12/16/10</td><td >137</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=292751589">ss292751589</a></td><td >PJP|SNP_2257947_chr22_28976126</td><td ></td><td >fwd/</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >01/21/11</td><td >01/21/11</td><td >134</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=410959265">ss410959265</a></td><td >ILLUMINA|Cardio-Metabo_Chip_11395247_A_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >06/07/11</td><td >06/08/11</td><td >135</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=481949360">ss481949360</a></td><td >ILLUMINA|HumanOmni2.5-4v1_B_rs9606708-128_B_F_1617221482</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >01/30/12</td><td >02/01/12</td><td >137</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=481982920">ss481982920</a></td><td >ILLUMINA|HumanOmniExpress-12v1_C_rs9606708-131_B_F_1857685230</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >01/30/12</td><td >02/01/12</td><td >137</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=482938092">ss482938092</a></td><td >ILLUMINA|HumanOmni1-Quad_v1-0_C_rs9606708-131_B_F_1865217451</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >01/30/12</td><td >02/02/12</td><td >137</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=485768355">ss485768355</a></td><td >ILLUMINA|HumanOmni2.5-4v1_D_rs9606708-131_B_F_1857685230</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >01/30/12</td><td >02/05/12</td><td >137</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=537617001">ss537617001</a></td><td >ILLUMINA|HumanOmni5-4v1_B__rs9606708-131_B_F_1885686767</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >06/22/12</td><td >07/04/12</td><td >138</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=662540137">ss662540137</a></td><td >SSMP|22_30646126</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">atggactctggcctcattcacaaccaggtt</span></td><td >12/14/12</td><td >12/17/12</td><td >138</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR></TABLE><BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="fasta"><strong>Fasta sequence (<a href="javascript:openPopup("snp_legend.cgi?legend=fasta");">Legend</a>)</strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE><DIV id="Fasta" style="font-family:courier;text-align:left;"><div style="text-align:left">>gnl|dbSNP|rs9606708|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=138<PRE> CCCCATCCAC AAGTCTCTCC TGGGATATCA CAGCTGCTTA TTTTCCAGAT GGGGAAATTG
AGGCTCAGAG AGGTGAAGAT AACTATGTGG GGCTCACATA AAGAGTTAAT AACAGAGCCA
GGTCTGGAAC CGGGGCTTCT GTCTTGCAGG CCACAACAAT CCCTGCAGCA CCTCTTGCTC
TGAGAGGGCG AAGGGCATGG CAGGAGTGCT CGGGTCGCCT TCCTCCAGGA AGCCTCCCCT
GCCTCCCATG GCCCCGACCA GCTCACATCG GCCATGTCCT GCCTGCTCGT GTTTCAAGTG
GGGATGAGTC TTATTCCTCA ACCTTTGAGA GTTTGAATGG GGTCTGAGAC TCACTTGTGC
TCTAGACAGC ACCTGGCTCA GGGCTATACT CTGACATGAA TAGAGGTTAA GTATTTTTTG
AGAAAGCATT TTATAGTTTC CAAAAACTGT CAGTGCCAAC TCTCTTGTGG AAAGGAGATG
GAGAGGCCTG AAGGTTTGAA
<span style="color:green;">K</span>
AATGGACTCT GGCCTCATTC ACAACCAGGT TGGAGGTTTG GCTCTGCCAG TTATGAGCTG
AGTGACTTTG GGGAAGGGAC TACCACCTCC TGGCCTCAGT TTCTTCAACT ATAAAATGGG
AATAATGGTA CCGCCTTTGT GGGTCTGCTG TGAGGGCTCA GGGCTCAGCA TGGTTCTGGG
CACCCAGCAA GCCACCTGTC TGCATATCAT CACCCATTGT GCTGACCTCC CTGTGAAGCA
GGGGTTCATT TGACAGATGG GGAAACTTGG GTCCATGCCA GGGTGCTGAG CGGGGAAGGC
TGGGCAGGAG CAAGACCTCT CAAGCCTCTG CTGATGGTAA ATTGAGGCAA GATACCCACG
TAGCCTCCAG CTTCAAGGGT GCCCCAGATA AATCAGACAG GTTGTGGGAG GGGGCTGGCA
GGGCAGTGTG CTCACTCCCC CAGAGCCCCC TTCCTGGCCC CTCACCACCC CCACCCCAAG
CCTGATCTGA GGACAGCAGC
</PRE>
</div></DIV><BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="resource"><strong>NCBI Resource Links</strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE><TABLE width="50%" ><TR valign="top"><td ><TABLE ><TR style="text-align:left"><TH bgcolor="silver" colspan="1">Submitter-Referenced</TH></TR><TR style="text-align:left"><td bgcolor="#f0f0f0">GenBank</td></TR><TR style="text-align:left"><td bgcolor="#dfdfdf"><a href="http://www.ncbi.nlm.nih.gov/nuccore/NT_011520">NT_011520</a>
<a href="http://www.ncbi.nlm.nih.gov/nuccore/ABBA01055293">ABBA01055293</a>
</td></TR></TABLE></td><td ><TABLE ><TR ><TH bgcolor="silver" colspan="0">dbSNP Blast Analysis</TH></TR><TR ></TR><TR ></TR></TABLE></td><td ></td><td ></td><td ></td></TR></TABLE><BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="Diversity"><strong>Population Diversity (in rs orientation)</strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE><BR><TABLE id="Diversity"><TR ><TH bgcolor="silver"> </TH><TH bgcolor="silver" colspan="4">Sample Ascertainment</TH><TH bgcolor="silver" colspan="4">Genotype Detail</TH><TH bgcolor="silver" colspan="3">Alleles</TH></TR><TR ><TH bgcolor="silver">ss#</TH><TH bgcolor="silver">Population</TH><TH bgcolor="silver">Individual<BR>Group</TH><TH bgcolor="silver">Chrom.<BR>Sample Cnt.<br></TH><TH bgcolor="silver">Source</TH><TH bgcolor="silver">G/G<BR><IMG border="0" height="6" src="gif/orange.gif" width="20"></TH><TH bgcolor="silver">G/T<BR><IMG border="0" height="6" src="gif/green.gif" width="20"></TH><TH bgcolor="silver">T/T<BR><IMG border="0" height="6" src="gif/blue.gif" width="20"></TH><TH bgcolor="silver">HWP</TH><TH bgcolor="silver">G<BR><IMG border="0" height="6" src="gif/orange.gif" width="20"></TH><TH bgcolor="silver">T<BR><IMG border="0" height="6" src="gif/blue.gif" width="20"></TH></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss138346539">ss138346539</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12269">ENSEMBL_Watson</a></td><td style="text-align:left"></td><td style="text-align:left"> 2</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> 1.000</span></td><td > </td><td ><span size="-1"> </span></td><td ><span size="-1"> 1.000</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/green.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="120"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="80"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss143491661">ss143491661</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12632">ENSEMBL_Venter</a></td><td style="text-align:left"></td><td style="text-align:left"> 2</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> 1.000</span></td><td > </td><td ><span size="-1"> </span></td><td ><span size="-1"> 1.000</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/green.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="120"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="80"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss238051055">ss238051055</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=13148">pilot_1_CEU_low_coverage_panel</a></td><td style="text-align:left"></td><td style="text-align:left"> 120</td><td style="text-align:left">AF</td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td > </td><td ><span size="-1"> 0.725</span></td><td ><span size="-1"> 0.275</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/green.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="58"><IMG border="0" height="6" src="gif/blue.gif" width="22"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss244174526">ss244174526</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=13149">pilot_1_CHB+JPT_low_coverage_panel</a></td><td style="text-align:left"></td><td style="text-align:left"> 120</td><td style="text-align:left">AF</td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td > </td><td ><span size="-1"> 0.675</span></td><td ><span size="-1"> 0.325</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/green.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="54"><IMG border="0" height="6" src="gif/blue.gif" width="26"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss41545403">ss41545403</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1409">HapMap-CEU</a></td><td style="text-align:left">European</td><td style="text-align:left"> 222</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.486</span></td><td style="text-align:left"><span size="-1"> 0.414</span></td><td style="text-align:left"><span size="-1"> 0.099</span></td><td ><span size="-1"> 1.000</span></td><td ><span size="-1"> 0.694</span></td><td ><span size="-1"> 0.306</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="58.32"><IMG border="0" height="6" src="gif/green.gif" width="49.68"><IMG border="0" height="6" src="gif/blue.gif" width="11.88"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="55.52"><IMG border="0" height="6" src="gif/blue.gif" width="24.48"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1410">HapMap-HCB</a></td><td style="text-align:left">Asian</td><td style="text-align:left"> 86</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.372</span></td><td style="text-align:left"><span size="-1"> 0.395</span></td><td style="text-align:left"><span size="-1"> 0.233</span></td><td ><span size="-1"> 0.251</span></td><td ><span size="-1"> 0.570</span></td><td ><span size="-1"> 0.430</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="44.64"><IMG border="0" height="6" src="gif/green.gif" width="47.4"><IMG border="0" height="6" src="gif/blue.gif" width="27.96"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="45.6"><IMG border="0" height="6" src="gif/blue.gif" width="34.4"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1411">HapMap-JPT</a></td><td style="text-align:left">Asian</td><td style="text-align:left"> 166</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.398</span></td><td style="text-align:left"><span size="-1"> 0.518</span></td><td style="text-align:left"><span size="-1"> 0.084</span></td><td ><span size="-1"> 0.200</span></td><td ><span size="-1"> 0.657</span></td><td ><span size="-1"> 0.343</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="47.76"><IMG border="0" height="6" src="gif/green.gif" width="62.16"><IMG border="0" height="6" src="gif/blue.gif" width="10.08"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="52.56"><IMG border="0" height="6" src="gif/blue.gif" width="27.44"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1412">HapMap-YRI</a></td><td style="text-align:left">Sub-Saharan African</td><td style="text-align:left"> 224</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.982</span></td><td style="text-align:left"><span size="-1"> 0.018</span></td><td style="text-align:left"><span size="-1"> </span></td><td ><span size="-1"> 1.000</span></td><td ><span size="-1"> 0.991</span></td><td ><span size="-1"> 0.009</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="117.84"><IMG border="0" height="6" src="gif/green.gif" width="2.16"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="79.28"><IMG border="0" height="6" src="gif/blue.gif" width="0.72"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12156">HAPMAP-ASW</a></td><td style="text-align:left"></td><td style="text-align:left"> 98</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.735</span></td><td style="text-align:left"><span size="-1"> 0.245</span></td><td style="text-align:left"><span size="-1"> 0.020</span></td><td ><span size="-1"> 1.000</span></td><td ><span size="-1"> 0.857</span></td><td ><span size="-1"> 0.143</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="88.2"><IMG border="0" height="6" src="gif/green.gif" width="29.4"><IMG border="0" height="6" src="gif/blue.gif" width="2.4"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="68.56"><IMG border="0" height="6" src="gif/blue.gif" width="11.44"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12157">HAPMAP-CHB</a></td><td style="text-align:left">Asian</td><td style="text-align:left"> 80</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.300</span></td><td style="text-align:left"><span size="-1"> 0.550</span></td><td style="text-align:left"><span size="-1"> 0.150</span></td><td ><span size="-1"> 0.439</span></td><td ><span size="-1"> 0.575</span></td><td ><span size="-1"> 0.425</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="36"><IMG border="0" height="6" src="gif/green.gif" width="66"><IMG border="0" height="6" src="gif/blue.gif" width="18"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="46"><IMG border="0" height="6" src="gif/blue.gif" width="34"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12158">HAPMAP-CHD</a></td><td style="text-align:left"></td><td style="text-align:left"> 166</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.494</span></td><td style="text-align:left"><span size="-1"> 0.373</span></td><td style="text-align:left"><span size="-1"> 0.133</span></td><td ><span size="-1"> 0.200</span></td><td ><span size="-1"> 0.681</span></td><td ><span size="-1"> 0.319</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="59.28"><IMG border="0" height="6" src="gif/green.gif" width="44.76"><IMG border="0" height="6" src="gif/blue.gif" width="15.96"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="54.48"><IMG border="0" height="6" src="gif/blue.gif" width="25.52"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12159">HAPMAP-GIH</a></td><td style="text-align:left"></td><td style="text-align:left"> 174</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.241</span></td><td style="text-align:left"><span size="-1"> 0.471</span></td><td style="text-align:left"><span size="-1"> 0.287</span></td><td ><span size="-1"> 0.655</span></td><td ><span size="-1"> 0.477</span></td><td ><span size="-1"> 0.523</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="28.92"><IMG border="0" height="6" src="gif/green.gif" width="56.52"><IMG border="0" height="6" src="gif/blue.gif" width="34.44"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="38.16"><IMG border="0" height="6" src="gif/blue.gif" width="41.84"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12160">HAPMAP-LWK</a></td><td style="text-align:left"></td><td style="text-align:left"> 178</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.978</span></td><td style="text-align:left"><span size="-1"> 0.022</span></td><td style="text-align:left"><span size="-1"> </span></td><td ><span size="-1"> 1.000</span></td><td ><span size="-1"> 0.989</span></td><td ><span size="-1"> 0.011</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="117.36"><IMG border="0" height="6" src="gif/green.gif" width="2.64"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="79.12"><IMG border="0" height="6" src="gif/blue.gif" width="0.88"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12161">HAPMAP-MEX</a></td><td style="text-align:left"></td><td style="text-align:left"> 100</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.200</span></td><td style="text-align:left"><span size="-1"> 0.600</span></td><td style="text-align:left"><span size="-1"> 0.200</span></td><td ><span size="-1"> 0.200</span></td><td ><span size="-1"> 0.500</span></td><td ><span size="-1"> 0.500</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="24"><IMG border="0" height="6" src="gif/green.gif" width="72"><IMG border="0" height="6" src="gif/blue.gif" width="24"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="40"><IMG border="0" height="6" src="gif/blue.gif" width="40"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12162">HAPMAP-MKK</a></td><td style="text-align:left"></td><td style="text-align:left"> 286</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.825</span></td><td style="text-align:left"><span size="-1"> 0.175</span></td><td style="text-align:left"><span size="-1"> </span></td><td ><span size="-1"> 0.655</span></td><td ><span size="-1"> 0.913</span></td><td ><span size="-1"> 0.087</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="99"><IMG border="0" height="6" src="gif/green.gif" width="21"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="73.04"><IMG border="0" height="6" src="gif/blue.gif" width="6.96"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12163">HAPMAP-TSI</a></td><td style="text-align:left"></td><td style="text-align:left"> 176</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.330</span></td><td style="text-align:left"><span size="-1"> 0.466</span></td><td style="text-align:left"><span size="-1"> 0.205</span></td><td ><span size="-1"> 0.655</span></td><td ><span size="-1"> 0.562</span></td><td ><span size="-1"> 0.438</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="39.6"><IMG border="0" height="6" src="gif/green.gif" width="55.92"><IMG border="0" height="6" src="gif/blue.gif" width="24.6"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="44.96"><IMG border="0" height="6" src="gif/blue.gif" width="35.04"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss69274569">ss69274569</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1409">HapMap-CEU</a></td><td style="text-align:left">European</td><td style="text-align:left"> 120</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.517</span></td><td style="text-align:left"><span size="-1"> 0.400</span></td><td style="text-align:left"><span size="-1"> 0.083</span></td><td ><span size="-1"> 1.000</span></td><td ><span size="-1"> 0.717</span></td><td ><span size="-1"> 0.283</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="62.04"><IMG border="0" height="6" src="gif/green.gif" width="48"><IMG border="0" height="6" src="gif/blue.gif" width="9.96"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="57.36"><IMG border="0" height="6" src="gif/blue.gif" width="22.64"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1410">HapMap-HCB</a></td><td style="text-align:left">Asian</td><td style="text-align:left"> 90</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.400</span></td><td style="text-align:left"><span size="-1"> 0.378</span></td><td style="text-align:left"><span size="-1"> 0.222</span></td><td ><span size="-1"> 0.150</span></td><td ><span size="-1"> 0.589</span></td><td ><span size="-1"> 0.411</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="48"><IMG border="0" height="6" src="gif/green.gif" width="45.36"><IMG border="0" height="6" src="gif/blue.gif" width="26.64"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="47.12"><IMG border="0" height="6" src="gif/blue.gif" width="32.88"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1411">HapMap-JPT</a></td><td style="text-align:left">Asian</td><td style="text-align:left"> 90</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.400</span></td><td style="text-align:left"><span size="-1"> 0.511</span></td><td style="text-align:left"><span size="-1"> 0.089</span></td><td ><span size="-1"> 0.403</span></td><td ><span size="-1"> 0.656</span></td><td ><span size="-1"> 0.344</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="48"><IMG border="0" height="6" src="gif/green.gif" width="61.32"><IMG border="0" height="6" src="gif/blue.gif" width="10.68"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="52.48"><IMG border="0" height="6" src="gif/blue.gif" width="27.52"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1412">HapMap-YRI</a></td><td style="text-align:left">Sub-Saharan African</td><td style="text-align:left"> 120</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 1.000</span></td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td > </td><td ><span size="-1"> 1.000</span></td><td ><span size="-1"> </span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="120"><IMG border="0" height="6" src="gif/green.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="80"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss96097413">ss96097413</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=10098">J. Craig Venter</a></td><td style="text-align:left"></td><td style="text-align:left"> 2</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> 1.000</span></td><td > </td><td ><span size="-1"> </span></td><td ><span size="-1"> 1.000</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/green.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="120"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="80"></td><td > </td></TR></TABLE><BR><TABLE ><TR ><TH bgcolor="silver">Summary</TH><TH bgcolor="silver">Average<BR>Het.+/- std err:</TH><TH bgcolor="silver">Individual<BR>Count</TH><TH bgcolor="silver">Founders<BR>Count</TH><TH bgcolor="silver">Individual<BR>Overlap</TH><TH bgcolor="silver">Genotype<BR>Conflict</TH><TH bgcolor="silver">Additional Freq. Data</TH></TR><TR ><td ></td><td ><span size="-1">0.414</span><span color="gray" size="-3">+/-0.189</span></td><td >1210</td><td >1005</td><td >270</td><td >0</td><td ><a href="http://alfred.med.yale.edu/alfred/recordinfod.asp?UNID=SI645266D">ALFRED: The Allele Frequency Database</a></td></TR></TABLE><BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="validation"><strong>Validation Summary:</strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE><TABLE id="Validation"><TH bgcolor="silver"><a href="javascript:openPopup("snp_legend.cgi?legend=validation")"><strong>Validation status</strong></a></TH><TH bgcolor="silver">Marker displays<BR> Mendelian segregation</TH><TH bgcolor="silver">PCR results confirmed<BR> in multiple reactions</TH><TH bgcolor="silver">Homozygotes detected<BR>in individual genotype data</TH><TR ><td style="text-align:left"><IMG border="0" height="17" src="gif/val_cluster.gif" alt="byCluster" width="15"><IMG border="0" height="17" src="gif/val_freq.gif" alt="byFreq" width="15"><IMG border="0" height="17" src="gif/val_2hit.gif" alt="with2hit" width="15"><IMG border="0" height="17" src="gif/val_hapmap.gif" alt="withHapMapFreq" width="15"><IMG border="0" height="17" src="gif/val_1000G.gif" alt="With1000GenomeData" width="15"><TABLE ><TR valign="top"><td ></td></TR><TR valign="top"><td ><span size="-1"><I>DoubleHit found by: </I> <a href="snp_viewTable.cgi?h=BCM_SSAHASNP">BCM_SSAHASNP</a></span></td></TR></TABLE></td><td style="text-align:left">UNKNOWN</td><td style="text-align:left">UNKNOWN</td><td style="text-align:left">UNKNOWN</td></TR></TABLE><!--start printTemplateBottom-->
</TD></TR></TABLE>
<!--Bottom Link Start --><!-- #BeginLibraryItem "/Library/dbSNPTextLinks.lbi" -->
<!--Bottom Link Start -->
<p> <b>GENERAL</b>: <a href="javascript:Help();">Contact Us</a> | <a href="index.html">Homepage</a> | <a href="http://www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce" >Announcements</a>
|<a href="snp_summary.cgi">dbSNP Summary</a> | <a href="http://www.nhgri.nih.gov/">Genome</a>
| <a href="ftp://ftp.ncbi.nih.gov/snp/">FTP SERVER</a> | <a href="buildhistory.cgi">Build
History</a> | <a href="handle.html">Handle Request</a> <br>
<b>DOCUMENTATION</b>: <a href="books/NBK3848">FAQ</a>
| <a href="http://www.ncbi.nlm.nih.gov/books/NBK3848">Searchable FAQ Archive</a> | <a accesskey="G" href="get_html.cgi?whichHtml=overview" >Overview</a> |
<a href="how_to_submit.html">How to Submit</a> | <a accesskey="I" href="get_html.cgi?whichHtml=verbose" >RefSNP
Summary Info</a> | <a accesskey="J" href="ftp://ftp.ncbi.nih.gov/snp/database/erd_dbSNP.pdf" >Database
Schema</a><br>
<b>SEARCH</b>: <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?db=Snp">Entrez SNP</a> | <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&BLAST_SPEC=SNP&BLAST_PROGRAMS=megaBlast&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&LINK_LOC=dbSNP_homepage">Blast SNP</a> | <a accesskey="M" href="batchquery.html" >Batch Query</a> |
<a href="snp_tableList.cgi?type=submitter" > By Submitter</a> |<a accesskey="O" href="snp_batchSearch.cgi?in
it=y" >New
Batches</a> | <a href="snp_tableList.cgi?type=method" >Method</a> | <a href="snp_tableList.cgi?type=pop" >Population</a>
| <a href="snp_tableList.cgi?type=pub" >Publication</a>
<!-- | <a href="../maplists/maplist-newmap.html" >Chromosome Report</a> -->| <a href="index.html#Batch">Batch</a>
| <a href="index.html#Locus">Locus Info</a> | <a href="index.html#Markers">Between
Marker <br>
</a> <!-- <b>HAPLOTYPE</b>:<a href="../hap/dbSNP_haplotype_intro.html">Submission</a> | <a href="../HapMap/index.html">Specifications</a> | <a href="../hapset.cgi?hapset_id=1">Sample HapSet</a> |
<a href="../hap_ind.cgi?ind_id=3">Sample Individual</a><br> -->
<b>NCBI</b>: <a href="/PubMed/">PubMed</a> | <a href="/">Entrez</a> |
<a href="/BLAST/">BLAST</a> | <a href="/omim/">OMIM</a> | <a href="/Taxonomy/taxonomyhome.html">Taxonomy</a>
| <a href="/Structure/">Structure</a> </p>
<p><a href="http://www.ncbi.nlm.nih.gov/About/disclaimer.html"
class="SMALL1">Disclaimer</a> <a
href="http://www.nlm.nih.gov/privacy.html"
class="SMALL1">Privacy statement</a></p>
<!-- #EndLibraryItem --><!-- #EndEditable --> <br>
</tr>
</table>
<!-- end of content -->
<script type="text/javascript" src="/portal/portal3rc.fcgi/rlib/js/InstrumentOmnitureBaseJS/InstrumentNCBIBaseJS/InstrumentPageStarterJS.js"></script>
</body>
<!-- the header -->
<!-- #EndTemplate --></html>