/
INSTALL
executable file
·49 lines (30 loc) · 1.27 KB
/
INSTALL
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
# $Id$
bioperl-dev INSTALLATION
INSTALL THE RIGHT BIOPERL
You need the latest developer snapshot of Bioperl for the highest
probability of success. The bioperl-dev repository contains highly
experimental code, and is likely to depend on the very latest commits.
For instructions on installing latest revision, bioperl-live/trunk,
see http://www.bioperl.org/wiki/Using_Subversion.
INSTALLATION
Installation instructions at the following address apply here:
http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix
The next section summarizes the essential points from there.
INSTALLATION FROM SVN CHECKOUT
Check out a working copy of the bioperl-dev trunk:
>svn svn://code.open-bio.org/bioperl/bioperl-dev/trunk bioperl-dev
Issue the following command from within bioperl-dev/:
>perl Build.PL
You can run regression tests and install bioperl-dev using the
following commands:
>./Build test
>./Build install
NOTE: many tests will be skipped without the necessary environment
variables set to tell Bioperl where your programs are installed.
INSTALLING bioperl-dev ON WINDOWS
[stub]
ENVIRONMENT VARIABLES
Some important environment variables you need to be aware of.
Variable Values Comment
--------------------------------------------------------------------
[stub]