/
lfp.py
213 lines (154 loc) · 11.5 KB
/
lfp.py
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import glob, os
from PyQt4 import QtGui, QtCore
from PyQt4.QtCore import *
from PyQt4.QtGui import *
from analysis import *
class LFP(QtGui.QWidget):
def __init__(self, parent):
print "... initializing LFP tools..."
super(LFP, self).__init__(parent)
layout = QtGui.QGridLayout()
self.parent = parent
#self.parent.root_dir = '/media/cat/12TB/in_vivo/tim/cat/'
self.parent.root_dir = '/media/cat/8TB/in_vivo/nick/lfp_clustering/'
#self.selected_recording = self.parent.root_dir
#self.selected_sort_sua = self.parent.root_dir
#self.selected_sort_lfp = self.parent.root_dir
#CAT VISUAL
self.selected_recording = '/media/cat/8TB/in_vivo/nick/lfp_clustering/ptc21/tr5c/recordings/61-tr5c-blankscreen/61-tr5c-blankscreen_alltrack_lfp.tsf'
self.selected_sort_sua = '/media/cat/8TB/in_vivo/nick/lfp_clustering/ptc21/tr5c/recordings/61-tr5c-blankscreen/61-tr5c-blankscreen_alltrack.ptcs'
self.selected_sort_lfp = '/media/cat/8TB/in_vivo/nick/lfp_clustering/ptc21/tr5c/recordings/61-tr5c-blankscreen/61-tr5c-blankscreen_alltrack_lfp_50compressed.ptcs'
#MOUSE AUDITORY
#self.selected_recording = '/media/cat/12TB/in_vivo/tim/cat/2016_07_26_vsd_auditory/sort_alltrack2/track2_spontaneous_1iso_160726_215426_lfp_250hz_alltrack.tsf'
#self.selected_sort_sua = '/media/cat/12TB/in_vivo/tim/cat/2016_07_26_vsd_auditory/sort_alltrack2/track2_spontaneous_1iso_160726_215426_hp_butter_alltrack.ptcs'
#self.selected_sort_lfp = '/media/cat/12TB/in_vivo/tim/cat/2016_07_26_vsd_auditory/sort_alltrack2/track2_spontaneous_1iso_160726_215426_lfp_250hz_alltrack_50compressed.ptcs'
#MOUSE VISUAL
#self.selected_recording = '/media/cat/12TB/in_vivo/tim/cat/2017_02_03_visual_ephys_ophys/sort_alltrack_spontaneous/track_1_spontaneous_1_170203_172405_lfp_250hz_alltrack.tsf'
#self.selected_sort_sua = '/media/cat/12TB/in_vivo/tim/cat/2017_02_03_visual_ephys_ophys/sort_alltrack_spontaneous/track_1_spontaneous_1_170203_172405_hp_butter_alltrack.ptcs'
#self.selected_sort_lfp = '/media/cat/12TB/in_vivo/tim/cat/2017_02_03_visual_ephys_ophys/sort_alltrack_spontaneous/track_1_spontaneous_1_170203_172405_lfp_250hz_alltrack_50compressed_4.0threshold_3clusters.ptcs'
#MOUSE BARREL
#self.selected_recording = '/media/cat/12TB/in_vivo/tim/cat/2017_01_26_barrel_ephys_ophys/sort_alltrack_spontaneous/track_1_spontaneous_1_170126_153637_lfp_100hz_alltrack.tsf'
#self.selected_sort_sua = '/media/cat/12TB/in_vivo/tim/cat/2017_01_26_barrel_ephys_ophys/sort_alltrack_spontaneous/track_1_spontaneous_1_170126_153637_hp_butter_alltrack.ptcs'
#self.selected_sort_lfp = '/media/cat/12TB/in_vivo/tim/cat/2017_01_26_barrel_ephys_ophys/sort_alltrack_spontaneous/track_1_spontaneous_1_170126_153637_lfp_100hz_alltrack_50compressed.ptcs'
#self.selected_recording = '/media/cat/12TB/in_vivo/tim/cat/2017_01_31_barrel_ephys_ophys/sort_alltrack_spontaneous/track_1_spontaneous_1_170131_164034_lfp_250hz_alltrack.tsf'
#self.selected_sort_sua = '/media/cat/12TB/in_vivo/tim/cat/2017_01_31_barrel_ephys_ophys/sort_alltrack_spontaneous/track_1_spontaneous_1_170131_164034_hp_butter_alltrack.ptcs'
#self.selected_sort_lfp = '/media/cat/12TB/in_vivo/tim/cat/2017_01_31_barrel_ephys_ophys/sort_alltrack_spontaneous/track_1_spontaneous_1_170131_164034_lfp_250hz_alltrack_50compressed.ptcs'
#********************************* CHRONIC V1 ************************************
#self.selected_sort_sua = '/media/cat/12TB/in_vivo/tim/cat/Mouse_42/sorted_11_12_iso/spontaneous_42_iso_170311_103957_hp_butter_alltrack.ptcs'
#self.selected_sort_lfp = '/media/cat/12TB/in_vivo/tim/cat/Mouse_42/sorted_11_12_iso/spontaneous_42_iso_170311_103957_lfp_250hz_alltrack_notch_50compressed.ptcs'
#self.selected_recording = '/media/cat/12TB/in_vivo/tim/cat/Mouse_42/sorted_11_12_iso/spontaneous_42_iso_170311_103957_lfp_250hz_alltrack.tsf'
row_index = 0
#***********************************************************************************
#******************************* SELECT RECORDING / SORT ***************************
#***********************************************************************************
self.preprocess_lbl = QLabel('LOAD FILES', self)
self.preprocess_lbl.setFont(QtGui.QFont("Times", 12, QtGui.QFont.Bold) )
self.preprocess_lbl.setStyleSheet('color: blue')
layout.addWidget(self.preprocess_lbl, row_index, 0); row_index+=1
#Select recording
self.button_select_recording = QPushButton('Recording File')
self.button_select_recording.setMaximumWidth(200)
self.button_select_recording.clicked.connect(self.slct_recording)
layout.addWidget(self.button_select_recording, row_index, 0)
self.select_recording_lbl = QLabel(os.path.split(self.selected_recording)[1], self)
layout.addWidget(self.select_recording_lbl, row_index,1); row_index+=1
#Select sort
self.button_select_lfpsort = QPushButton('LFP Sort File')
self.button_select_lfpsort.setMaximumWidth(200)
self.button_select_lfpsort.clicked.connect(self.slct_sort_lfp)
layout.addWidget(self.button_select_lfpsort, row_index, 0)
self.select_sort_lfp_lbl = QLabel(os.path.split(self.selected_sort_lfp)[1], self)
layout.addWidget(self.select_sort_lfp_lbl, row_index,1); row_index+=1
#Select sort
self.button_select_suasort = QPushButton('SUA Sort File')
self.button_select_suasort.setMaximumWidth(200)
self.button_select_suasort.clicked.connect(self.slct_sort_sua)
layout.addWidget(self.button_select_suasort, row_index, 0)
self.selected_sort_sua_lbl = QLabel(os.path.split(self.selected_sort_sua)[1], self)
layout.addWidget(self.selected_sort_sua_lbl, row_index,1); row_index+=1
#***********************************************************************************
#************************** VIEW SPECGRAM AND RASTERS ******************************
#***********************************************************************************
self.preprocess_lbl = QLabel('SPECGRAMS AND RASTERS', self)
self.preprocess_lbl.setFont(QtGui.QFont("Times", 12, QtGui.QFont.Bold) )
self.preprocess_lbl.setStyleSheet('color: blue')
layout.addWidget(self.preprocess_lbl, row_index, 0); row_index+=1
self.specgram_ch = QLineEdit('63'); #parent.start_time = self.start_time
self.specgram_ch.setMaximumWidth(50)
specgram_ch_lbl = QLabel('specgram_ch:', self)
specgram_ch_lbl.setMaximumWidth(100)
layout.addWidget(specgram_ch_lbl, row_index,0)
layout.addWidget(self.specgram_ch, row_index,1)
self.time_start = QLineEdit('0'); #parent.start_time = self.start_time
self.time_start.setMaximumWidth(50)
time_start_lbl = QLabel('t_start:', self)
time_start_lbl.setMaximumWidth(100)
layout.addWidget(time_start_lbl, row_index,2)
layout.addWidget(self.time_start, row_index,3)
self.time_end = QLineEdit('10'); #parent.start_time = self.start_time
self.time_end.setMaximumWidth(50)
time_end_lbl = QLabel('t_end:', self)
time_end_lbl.setMaximumWidth(100)
layout.addWidget(time_end_lbl, row_index,4)
layout.addWidget(self.time_end, row_index,5)
self.specgram_db_clip = QLineEdit('-60'); #parent.start_time = self.start_time
self.specgram_db_clip.setMaximumWidth(50)
specgram_db_clip_lbl = QLabel('db_clip:', self)
specgram_db_clip_lbl.setMaximumWidth(100)
layout.addWidget(specgram_db_clip_lbl, row_index,6)
layout.addWidget(self.specgram_db_clip, row_index,7); row_index+=1
#****************************************************************************************************************
#************************************************** FUNCTIONS ***************************************************
#****************************************************************************************************************
self.button10 = QPushButton('View Spectrum')
self.button10.setLayoutDirection(QtCore.Qt.RightToLeft)
layout.addWidget(self.button10, row_index, 0)
self.button10.clicked.connect(self.view_Spectrum); row_index+=1
self.button10 = QPushButton('View Spegram')
self.button10.setLayoutDirection(QtCore.Qt.RightToLeft)
layout.addWidget(self.button10, row_index, 0)
self.button10.clicked.connect(self.view_Specgram); row_index+=1
self.button3 = QPushButton('Specgram + LFP Rasters')
self.button3.setMaximumWidth(200)
layout.addWidget(self.button3, row_index, 0)
self.button3.clicked.connect(self.view_lfp_raster); row_index+=1
self.tfr_spec = QPushButton('TFR Spegram + Rasters')
self.tfr_spec.setLayoutDirection(QtCore.Qt.RightToLeft)
layout.addWidget(self.tfr_spec, row_index, 0)
self.tfr_spec.clicked.connect(self.view_Specgram_tfr); row_index +=1
self.all_rasters = QPushButton('SUA and LFP Rasters')
layout.addWidget(self.all_rasters, row_index, 0)
self.all_rasters.clicked.connect(self.view_allrasters)
self.setLayout(layout)
def slct_recording(self):
self.selected_recording = QtGui.QFileDialog.getOpenFileName(self, "TSF (*.tsf)", self.selected_recording,"TSF (*.tsf)")
path_name, file_name = os.path.split(self.selected_recording)
self.select_recording_lbl.setText(file_name)
self.recName = self.selected_recording
#self.tsf = Tsf_file(self.selected_recording)
#self.tsf.read_ec_traces()
def slct_sort_lfp(self):
self.selected_sort_lfp = QtGui.QFileDialog.getOpenFileName(self, "PTCS (*.ptcs)", self.selected_recording,"PTCS (*.ptcs)")
path_name, file_name = os.path.split(self.selected_sort_lfp)
self.select_sort_lfp_lbl.setText(file_name)
def slct_sort_sua(self):
self.selected_sort_sua = QtGui.QFileDialog.getOpenFileName(self, "PTCS (*.ptcs)", self.selected_recording,"PTCS (*.ptcs)")
path_name, file_name = os.path.split(self.selected_sort_sua)
self.selected_sort_sua_lbl.setText(file_name)
#***************************************************************************************************
#************************************** DEFINE FUNCTIONS *******************************************
#***************************************************************************************************
def view_Spectrum(self):
#Specgram_syncindex(self, 0) #Use regular specgram
Spectrum(self) #Use regular specgram
def view_Specgram(self):
#Specgram_syncindex(self, 0) #Use regular specgram
Specgram_syncindex(self) #Use regular specgram
def view_lfp_raster(self):
#self.ptcsName = self.parent.animal.recName.replace('rhd_files','tsf_files').replace('.rhd','')+'_lp_compressed.ptcs'
self.ptcsName = self.selected_sort_lfp
plot_rasters(self)
def view_Specgram_tfr(self):
Specgram_syncindex_tfr(self) #Use TFR specgram
def view_allrasters(self):
plot_all_rasters(self)