- Python version
3.7, 3.8, 3.9, 3.10
- Issues
This tools is a simple Sniffer for Biological formats (and compression formats)
pip install biosniffbiosniff file.fasta
biosniff example.vcf
...There are about 50 formats supported for now including:
abi, bam, bai, bcf, binary_bed, bed, bedgraph, bigwig, bigbed, bplink, bz2, cram, clustal, dsrc, embl,ena, fasta, fastq, genbank, gfa, gff2, gff3, gz, json, maf, newick, nexus, ods, paf, phylip, phyloxml, plink, qual, sam, scf, stockholm, rar, twobit, tsv, vcf, wiggle, wig, xls, xlsx, xmfa, yaml, zip, 7zip, xz
| Version | Description |
|---|---|
| 1.0.0 | * add logo, add Python 3.10 in CI and tag to version 1.0 |
| 0.4.0 | * additional test and fix missing click requirements |
| 0.3.0 | * add missing MANIFEST and applied black |
| 0.2.0 | * more tests (80% coverage) and some simplifications |
| 0.1.0 | * first commit |