Skip to content
This repository has been archived by the owner on Sep 1, 2021. It is now read-only.

Trouble loading chiral carbon nanotubes in .xyz format #956

Open
TheOldForest opened this issue Apr 6, 2021 · 0 comments
Open

Trouble loading chiral carbon nanotubes in .xyz format #956

TheOldForest opened this issue Apr 6, 2021 · 0 comments

Comments

@TheOldForest
Copy link

For some reason Avogadro hangs and will never load the following molecular file (.xyz format), even though it is able to load a similar carbon nanotube file with a comparable number of atoms. Any ideas?

364

C 3.802459 -0.000000 -20.613164
C 3.800214 0.130654 -18.121463
C 3.479945 1.532542 -18.197224
C 3.166329 2.105482 -19.480573
C 2.158025 3.130755 -19.556334
C 3.793481 0.261155 -15.629762
C 3.425231 1.651209 -15.705523
C 3.092114 2.213036 -16.988872
C 2.049177 3.203057 -17.064633
C 1.470781 3.506494 -18.347982
C 0.063451 3.801930 -18.423742
C -0.588139 3.756699 -19.707091
C -1.941153 3.269652 -19.782852
C 3.782267 0.391346 -13.138061
C 3.366472 1.767927 -13.213822
C 3.014247 2.317976 -14.497171
C 1.937908 3.271576 -14.572932
C 1.349428 3.554960 -15.856281
C -0.067223 3.801865 -15.932041
C -0.716874 3.734272 -17.215390
C -2.052353 3.201022 -17.291151
C -2.569891 2.802563 -18.574500
C -3.426867 1.647810 -18.650261
C -3.658314 1.037034 -19.933610
C -3.781819 -0.395658 -20.009370
C 3.766587 0.521076 -10.646360
C 3.303737 1.882557 -10.722121
C 2.932821 2.420178 -12.005470
C 1.824351 3.336232 -12.081231
C 1.226480 3.599228 -13.364579
C -0.197817 3.797310 -13.440340
C -0.844762 3.707435 -14.723689
C -2.161130 3.128612 -14.799450
C -2.664671 2.712605 -16.082799
C -3.481463 1.529088 -16.158560
C -3.691786 0.910720 -17.441909
C -3.765990 -0.525370 -17.517669
C -3.620520 -1.162123 -18.801018
C -2.930059 -2.423520 -18.876779
C -2.472076 -2.889210 -20.160128
C -1.222376 -3.600624 -20.235889
C 3.802459 -0.000563 -6.871310
C 3.746458 0.650190 -8.154659
C 3.237101 1.994963 -8.230420
C 2.847930 2.519522 -9.513769
C 1.708639 3.396947 -9.589529
C 1.102085 3.639245 -10.872878
C -0.328178 3.788271 -10.948639
C -0.971653 3.676219 -12.231988
C -2.267355 3.052507 -12.307749
C -2.756304 2.619444 -13.591098
C -3.531948 1.408561 -13.666859
C -3.720899 0.783330 -14.950207
C -3.745715 -0.654461 -15.025968
C -3.578451 -1.285840 -16.309317
C -2.845056 -2.522768 -16.385078
C -2.371342 -2.972446 -17.668427
C -1.097935 -3.640500 -17.744188
C -0.458710 -3.774690 -19.027537
C 0.975844 -3.675109 -19.103297
C 1.590397 -3.453887 -20.386646
C 2.759289 -2.616299 -20.462407
C 3.800233 0.130092 -4.379609
C 3.721905 0.778536 -5.662958
C 3.166641 2.105014 -5.738719
C 2.759676 2.615891 -7.022067
C 1.590909 3.453651 -7.097828
C 0.976388 3.674965 -8.381177
C -0.458151 3.774758 -8.456938
C -1.097396 3.640662 -9.740287
C -2.370902 2.972797 -9.816048
C -2.844682 2.523189 -11.099397
C -3.578261 1.286369 -11.175157
C -3.745618 0.655016 -12.458506
C -3.721015 -0.782779 -12.534267
C -3.532156 -1.408038 -13.817616
C -2.756692 -2.619035 -13.893377
C -2.267807 -3.052171 -15.176726
C -0.972197 -3.676075 -15.252487
C -0.328739 -3.788222 -16.535835
C 1.101546 -3.639408 -16.611596
C 1.708136 -3.397200 -17.894945
C 2.847557 -2.519944 -17.970706
C 3.236805 -1.995442 -19.254055
C 3.746362 -0.650745 -19.329816
C 3.793519 0.260593 -1.887908
C 3.692957 0.905963 -3.171257
C 3.092442 2.212578 -3.247017
C 2.668163 2.709170 -4.530366
C 1.471300 3.506276 -4.606127
C 0.849538 3.706344 -5.889476
C -0.587583 3.756786 -5.965237
C -1.221843 3.600805 -7.248586
C -2.471648 2.889576 -7.324347
C -2.929700 2.423954 -8.607695
C -3.620348 1.162659 -8.683456
C -3.765913 0.525928 -9.966805
C -3.691921 -0.910173 -10.042566
C -3.481690 -1.528573 -11.325915
C -2.665073 -2.712210 -11.401676
C -2.161593 -3.128292 -12.685025
C -0.845311 -3.707310 -12.760785
C -0.198379 -3.797281 -14.044134
C 1.225948 -3.599410 -14.119895
C 1.823857 -3.336502 -15.403244
C 2.932462 -2.420612 -15.479005
C 3.303458 -1.883046 -16.762354
C 3.766510 -0.521634 -16.838114
C 3.782325 0.390786 0.603793
C 3.659647 1.032320 -0.679555
C 3.014590 2.317529 -0.755316
C 2.573499 2.799250 -2.038665
C 1.349954 3.554761 -2.114426
C 0.721684 3.733346 -3.397775
C -0.716321 3.734378 -3.473536
C -1.344847 3.556696 -4.756885
C -2.569476 2.802943 -4.832645
C -3.011259 2.321857 -6.115994
C -3.658160 1.037575 -6.191755
C -3.781760 0.396218 -7.475104
C -3.658467 -1.036492 -7.550865
C -3.427111 -1.647303 -8.834214
C -2.570306 -2.802182 -8.909975
C -2.052827 -3.200718 -10.193323
C -0.717427 -3.734166 -10.269084
C -0.067786 -3.801855 -11.552433
C 1.348901 -3.555160 -11.628194
C 1.937423 -3.271863 -12.911543
C 3.013904 -2.318422 -12.987304
C 3.366210 -1.768425 -14.270653
C 3.782209 -0.391906 -14.346413
C 3.766664 0.520518 3.095495
C 3.622015 1.157458 1.812146
C 2.933179 2.419744 1.736385
C 2.475796 2.886023 0.453036
C 1.227013 3.599047 0.377275
C 0.592978 3.755939 -0.906074
C -0.844213 3.707560 -0.981835
C -1.466263 3.508386 -2.265183
C -2.664270 2.712999 -2.340944
C -3.089261 2.217017 -3.624293
C -3.691652 0.911266 -3.700054
C -3.793141 0.266041 -4.983403
C -3.620692 -1.161587 -5.059164
C -3.368485 -1.764088 -6.342513
C -2.472504 -2.888844 -6.418273
C -1.941637 -3.269365 -7.701622
C -0.588696 -3.756612 -7.777383
C 0.062888 -3.801939 -9.060732
C 1.470262 -3.506712 -9.136493
C 2.048702 -3.203360 -10.419842
C 3.091786 -2.213494 -10.495603
C 3.424986 -1.651716 -11.778951
C 3.793442 -0.261716 -11.854712
C 3.746555 0.649635 5.587196
C 3.580105 1.281229 4.303847
C 2.848303 2.519100 4.228086
C 2.375169 2.969389 2.944737
C 1.102624 3.639082 2.868976
C 0.463572 3.774096 1.585627
C -0.971109 3.676363 1.509867
C -1.585947 3.455933 0.226518
C -2.755916 2.619852 0.150757
C -3.163614 2.109560 -1.132592
C -3.720783 0.783881 -1.208353
C -3.800043 0.135550 -2.491702
C -3.578642 -1.285310 -2.567463
C -3.305881 -1.878789 -3.850811
C -2.371782 -2.972095 -3.926572
C -1.828153 -3.334150 -5.209921
C -0.459269 -3.774622 -5.285682
C 0.193487 -3.797533 -6.569031
C 1.589886 -3.454122 -6.644792
C 2.157562 -3.131074 -7.928141
C 3.166018 -2.105951 -8.003901
C 3.479718 -1.533057 -9.287250
C 3.800195 -0.131217 -9.363011
C 3.722021 0.777985 8.078897
C 3.533967 1.403486 6.795548
C 2.760064 2.615482 6.719787
C 2.271737 3.049247 5.436438
C 0.976932 3.674820 5.360677
C 0.333619 3.787796 4.077329
C -1.096857 3.640824 4.001568
C -1.703758 3.399398 2.718219
C -2.844308 2.523610 2.642458
C -3.234232 1.999611 1.359109
C -3.745521 0.655570 1.283348
C -3.802456 0.004898 -0.000001
C -3.532365 -1.407515 -0.075761
C -3.239373 -1.991271 -1.359110
C -2.268259 -3.051836 -1.434871
C -1.712511 -3.394997 -2.718220
C -0.329300 -3.788174 -2.793981
C 0.323858 -3.788643 -4.077330
C 1.707633 -3.397453 -4.153091
C 2.263873 -3.055090 -5.436439
C 3.236510 -1.995922 -5.512200
C 3.530339 -1.412587 -6.795549
C 3.693091 0.905416 10.570598
C 3.483656 1.524087 9.287249
C 2.668565 2.708775 9.211488
C 2.165622 3.125505 7.928139
C 0.850086 3.706218 7.852379
C 0.203271 3.797022 6.569030
C -1.221310 3.600986 6.493269
C -1.819557 3.338849 5.209920
C -2.929341 2.424388 5.134159
C -3.301030 1.887300 3.850810
C -3.765835 0.526485 3.775049
C -3.800379 -0.125759 2.491701
C -3.481916 -1.528057 2.415940
C -3.169039 -2.101402 1.132591
C -2.162057 -3.127972 1.056830
C -1.594846 -3.451835 -0.226519
C -0.198942 -3.797252 -0.302280
C 0.453847 -3.775278 -1.585629
C 1.823363 -3.336772 -1.661389
C 2.367511 -2.975498 -2.944738
C 3.303179 -1.883535 -3.020499
C 3.576792 -1.290448 -4.303848
C 3.659799 1.031778 13.062299
C 3.429230 1.642887 11.778950
C 2.573914 2.798869 11.703189
C 2.056949 3.198071 10.419841
C 0.722237 3.733239 10.344080
C 0.072683 3.801765 9.060731
C -1.344320 3.556895 8.984970
C -1.933207 3.274356 7.701621
C -3.010915 2.322303 7.625860
C -3.363929 1.772760 6.342511
C -3.781701 0.396778 6.266751
C -3.793814 -0.256268 4.983402
C -3.427355 -1.646796 4.907641
C -3.094962 -2.209051 3.624292
C -2.053301 -3.200414 3.548531
C -1.475297 -3.504597 2.265182
C -0.068349 -3.801845 2.189421
C 0.583299 -3.757454 0.906073
C 1.936939 -3.272150 0.830312
C 2.468352 -2.892393 -0.453037
C 3.365948 -1.768924 -0.528798
C 3.619020 -1.166786 -1.812147
C 3.622186 1.156922 15.554000
C 3.370755 1.759747 14.270651
C 2.476223 2.885657 14.194891
C 1.945847 3.266861 12.911542
C 0.593534 3.755851 12.835781
C -0.057990 3.802017 11.552432
C -1.465743 3.508603 11.476671
C -2.044574 3.205997 10.193322
C -3.088932 2.217475 10.117561
C -3.422856 1.656127 8.834213
C -3.793102 0.266603 8.758452
C -3.782768 -0.386474 7.475103
C -3.368746 -1.763589 7.399342
C -3.017231 -2.314091 6.115993
C -1.942121 -3.269077 6.040232
C -1.354006 -3.553219 4.756883
C 0.062325 -3.801949 4.681123
C 0.712063 -3.735193 3.397774
C 2.048228 -3.203664 3.322013
C 2.566279 -2.805871 2.038664
C 3.424742 -1.652224 1.962903
C 3.656975 -1.041746 0.679554
C 3.580295 1.280699 18.045701
C 3.308299 1.874528 16.762352
C 2.375609 2.969037 16.686592
C 1.832447 3.331792 15.403243
C 0.464131 3.774027 15.327482
C -0.188595 3.797780 14.044133
C -1.585435 3.456167 13.968372
C -2.153526 3.133851 12.685023
C -3.163302 2.110028 12.609263
C -3.477740 1.537538 11.325914
C -3.800023 0.136112 11.250153
C -3.767255 -0.516223 9.966804
C -3.306159 -1.878299 9.891043
C -2.935936 -2.416398 8.607694
C -1.828647 -3.333879 8.531933
C -1.231116 -3.597645 7.248585
C 0.192925 -3.797562 7.172824
C 0.839986 -3.708520 5.889475
C 2.157098 -3.131394 5.813714
C 2.661175 -2.716035 4.530365
C 3.479491 -1.533572 4.454604
C 3.690610 -0.915475 3.171255
C 3.534175 1.402963 20.537402
C 3.241935 1.987096 19.254054
C 2.272188 3.048911 19.178293
C 1.716883 3.392788 17.894944
C 0.334179 3.787746 17.819183
C -0.318978 3.789057 16.535834
C -1.703255 3.399650 16.460073
C -2.259935 3.058004 15.176724
C -3.233936 2.000089 15.100964
C -3.528517 1.417133 13.817615
C -3.802456 0.005461 13.741854
C -3.747293 -0.645363 12.458505
C -3.239668 -1.990791 12.382744
C -2.851173 -2.515851 11.099395
C -1.713013 -3.394744 11.023635
C -1.106772 -3.637823 9.740286
C 0.323297 -3.788691 9.664525
C 0.966916 -3.677468 8.381176
C 2.263421 -3.055426 8.305415
C 2.752928 -2.622992 7.022066
C 3.530130 -1.413109 6.946305
C 3.719887 -0.788123 5.662957
C 1.599291 3.449778 20.386645
C 0.203833 3.796992 20.310884
C -0.448983 3.775859 19.027535
C -1.819063 3.339118 18.951775
C -2.363676 2.978546 17.668426
C -3.300750 1.887789 17.592665
C -3.575127 1.295055 16.309316
C -3.800398 -0.125196 16.233555
C -3.722905 -0.773741 14.950206
C -3.169350 -2.100933 14.874445
C -2.763044 -2.612333 13.591097
C -1.595357 -3.451599 13.515336
C -0.981121 -3.673704 12.231987
C 0.453288 -3.775345 12.156226
C 1.092705 -3.642073 10.872877
C 2.367070 -2.975849 10.797116
C 2.841429 -2.526851 9.513767
C 3.576601 -1.290978 9.438007
C 3.744771 -0.659840 8.154658
C -2.464624 2.895570 20.160127
C -3.363667 1.773258 20.084366
C -3.617514 1.171447 18.801017
C -3.793852 -0.255706 18.725256
C -3.694121 -0.901205 17.441907
C -3.095290 -2.208592 17.366147
C -2.671651 -2.705730 16.082798
C -1.475816 -3.504378 16.007037
C -0.854311 -3.705246 14.723688
C 0.582743 -3.757540 14.647927
C 1.217203 -3.602376 13.364578
C 2.467924 -2.892758 13.288817
C 2.926575 -2.427726 12.005469
C 3.618848 -1.167322 11.929708
C 3.765232 -0.530779 10.646359
C -3.660973 -1.027605 19.933608
C -3.017573 -2.313644 19.857848
C -2.577103 -2.795932 18.574499
C -1.354532 -3.553019 18.498738
C -0.726493 -3.732413 17.215389
C 0.711510 -3.735298 17.139628
C 1.340264 -3.558425 15.856279
C 2.565863 -2.806251 15.780519
C 3.008265 -2.325734 14.497170
C 3.656820 -1.042287 14.421409
C 3.781246 -0.401090 13.138060
C -0.597816 -3.755172 19.707090
C 0.839437 -3.708645 19.631329
C 1.461742 -3.510272 18.347980
C 2.660772 -2.716429 18.272220
C 3.086402 -2.220995 16.988871
C 3.690475 -0.916021 16.913110
C 3.792795 -0.270927 15.629761
C 3.160894 -2.113633 19.480572
C 3.719770 -0.788674 19.404811
C 3.799865 -0.140445 18.121462

Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant