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test-smk-ds.dataFrameSubset.R
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test-smk-ds.dataFrameSubset.R
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#-------------------------------------------------------------------------------
# Copyright (c) 2018-2020 University of Newcastle upon Tyne. All rights reserved.
#
# This program and the accompanying materials
# are made available under the terms of the GNU Public License v3.0.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#-------------------------------------------------------------------------------
#
# Set up
#
context("ds.dataFrameSubset::smk::setup")
connect.studies.dataset.cnsim(list("LAB_TSC", "LAB_HDL", "PM_BMI_CATEGORICAL"))
test_that("setup", {
ds_expect_variables(c("D"))
})
#
# Tests
#
context("ds.dataFrameSubset::smk::create a subset dataframe")
test_that("dataFrameSubset_exists", {
myvectors <- c('D$LAB_TSC', 'D$LAB_HDL')
ds.dataFrame(x=myvectors, newobj="unsubset_df")
res.dim1 <- ds.dim('unsubset_df')
expect_length(res.dim1, 4)
expect_length(res.dim1$`dimensions of unsubset_df in sim1`, 2)
expect_equal(res.dim1$`dimensions of unsubset_df in sim1`[1], 2163)
expect_equal(res.dim1$`dimensions of unsubset_df in sim1`[2], 2)
expect_length(res.dim1$`dimensions of unsubset_df in sim2`, 2)
expect_equal(res.dim1$`dimensions of unsubset_df in sim2`[1], 3088)
expect_equal(res.dim1$`dimensions of unsubset_df in sim2`[2], 2)
expect_length(res.dim1$`dimensions of unsubset_df in sim3`, 2)
expect_equal(res.dim1$`dimensions of unsubset_df in sim3`[1], 4128)
expect_equal(res.dim1$`dimensions of unsubset_df in sim3`[2], 2)
res <- ds.dataFrameSubset(df.name="unsubset_df", V1.name="D$LAB_TSC", V2.name="D$LAB_HDL", Boolean.operator="!=", newobj="subset_df")
res.dim2 <- ds.dim('subset_df')
expect_length(res.dim2, 4)
expect_length(res.dim2$`dimensions of subset_df in sim1`, 2)
expect_equal(res.dim2$`dimensions of subset_df in sim1`[1], 1803)
expect_equal(res.dim2$`dimensions of subset_df in sim1`[2], 2)
expect_length(res.dim2$`dimensions of subset_df in sim2`, 2)
expect_equal(res.dim2$`dimensions of subset_df in sim2`[1], 2533)
expect_equal(res.dim2$`dimensions of subset_df in sim2`[2], 2)
expect_length(res.dim2$`dimensions of subset_df in sim3`, 2)
expect_equal(res.dim2$`dimensions of subset_df in sim3`[1], 3472)
expect_equal(res.dim2$`dimensions of subset_df in sim3`[2], 2)
expect_length(res, 2)
expect_equal(res$is.object.created, "A data object <subset_df> has been created in all specified data sources")
expect_equal(res$validity.check, "<subset_df> appears valid in all sources")
})
context("ds.dataFrameSubset::smk::create a subset dataframe, based on scalar")
test_that("dataFrameSubset_exists scalar", {
myvectors <- c('D$LAB_TSC', 'D$LAB_HDL', 'D$PM_BMI_CATEGORICAL')
ds.dataFrame(x=myvectors, newobj="unsubset_df")
res.dim1 <- ds.dim('unsubset_df')
expect_length(res.dim1, 4)
expect_length(res.dim1$`dimensions of unsubset_df in sim1`, 2)
expect_equal(res.dim1$`dimensions of unsubset_df in sim1`[1], 2163)
expect_equal(res.dim1$`dimensions of unsubset_df in sim1`[2], 3)
expect_length(res.dim1$`dimensions of unsubset_df in sim2`, 2)
expect_equal(res.dim1$`dimensions of unsubset_df in sim2`[1], 3088)
expect_equal(res.dim1$`dimensions of unsubset_df in sim2`[2], 3)
expect_length(res.dim1$`dimensions of unsubset_df in sim3`, 2)
expect_equal(res.dim1$`dimensions of unsubset_df in sim3`[1], 4128)
expect_equal(res.dim1$`dimensions of unsubset_df in sim3`[2], 3)
res <- ds.dataFrameSubset(df.name="unsubset_df", V1.name="D$PM_BMI_CATEGORICAL", V2.name="3", Boolean.operator="!=", newobj="subset_df")
res.dim2 <- ds.dim('subset_df')
expect_length(res.dim2, 4)
expect_length(res.dim2$`dimensions of subset_df in sim1`, 2)
expect_equal(res.dim2$`dimensions of subset_df in sim1`[1], 1457)
expect_equal(res.dim2$`dimensions of subset_df in sim1`[2], 3)
expect_length(res.dim2$`dimensions of subset_df in sim2`, 2)
expect_equal(res.dim2$`dimensions of subset_df in sim2`[1], 2072)
expect_equal(res.dim2$`dimensions of subset_df in sim2`[2], 3)
expect_length(res.dim2$`dimensions of subset_df in sim3`, 2)
expect_equal(res.dim2$`dimensions of subset_df in sim3`[1], 2769)
expect_equal(res.dim2$`dimensions of subset_df in sim3`[2], 3)
expect_length(res, 2)
expect_equal(res$is.object.created, "A data object <subset_df> has been created in all specified data sources")
expect_equal(res$validity.check, "<subset_df> appears valid in all sources")
})
#
# Done
#
context("ds.dataFrameSubset::smk::shutdown")
test_that("shutdown", {
ds_expect_variables(c("D", "unsubset_df", "subset_df"))
})
disconnect.studies.dataset.cnsim()
context("ds.dataFrameSubset::smk::down")