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test-smk-ds.testObjExists.R
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test-smk-ds.testObjExists.R
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#-------------------------------------------------------------------------------
# Copyright (c) 2019-2020 University of Newcastle upon Tyne. All rights reserved.
#
# This program and the accompanying materials
# are made available under the terms of the GNU Public License v3.0.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#-------------------------------------------------------------------------------
#
# Set up
#
context("ds.testObjExists::smk::setup")
connect.studies.dataset.cnsim(list("LAB_TSC", "LAB_HDL"))
test_that("setup", {
ds_expect_variables(c("D"))
})
#
# Tests
#
context("ds.testObjExists::smk")
test_that("simple testObjExists", {
res <- ds.testObjExists('D')
expect_length(res, 1)
expect_equal(res$return.message, "A valid copy of data object <D> exists in all specified data sources")
})
test_that("data.frame testObjExists", {
myvectors <- c('D$LAB_TSC', 'D$LAB_HDL')
ds.dataFrame(x=myvectors)
res <- ds.testObjExists("dataframe.newobj")
expect_length(res, 1)
expect_equal(res$return.message, "A valid copy of data object <dataframe.newobj> exists in all specified data sources")
})
test_that("data.frame testObjExists", {
res <- ds.testObjExists("D$TEST")
expect_length(res, 2)
expect_length(res$return.info, 3)
expect_length(res$return.info$sim1, 2)
expect_false(res$return.info$sim1$test.obj.exists)
expect_true(is.null(res$return.info$sim1$test.obj.class))
expect_length(res$return.info$sim2, 2)
expect_false(res$return.info$sim2$test.obj.exists)
expect_true(is.null(res$return.info$sim2$test.obj.class))
expect_length(res$return.info$sim3, 2)
expect_false(res$return.info$sim3$test.obj.exists)
expect_true(is.null(res$return.info$sim3$test.obj.class))
expect_length(res$return.info, 3)
expect_length(res$return.info, 3)
expect_length(res$return.message, 2)
expect_length(res$return.message[[1]], 1)
expect_equal(res$return.message[[1]], "Error: A valid data object <D$TEST> does NOT exist in ALL specified data sources")
expect_length(res$return.message[[2]], 1)
expect_equal(res$return.message[[2]], "It is either ABSENT and/or has no valid content/class, for details see return.info above")
})
test_that("data.frame testObjExists", {
res <- ds.testObjExists("TEST")
expect_length(res, 2)
expect_length(res$return.info, 3)
expect_length(res$return.info$sim1, 2)
expect_false(res$return.info$sim1$test.obj.exists)
expect_true(is.null(res$return.info$sim1$test.obj.class))
expect_length(res$return.info$sim2, 2)
expect_false(res$return.info$sim2$test.obj.exists)
expect_true(is.null(res$return.info$sim2$test.obj.class))
expect_length(res$return.info$sim3, 2)
expect_false(res$return.info$sim3$test.obj.exists)
expect_true(is.null(res$return.info$sim3$test.obj.class))
expect_length(res$return.info, 3)
expect_length(res$return.info, 3)
expect_length(res$return.message, 2)
expect_length(res$return.message[[1]], 1)
expect_equal(res$return.message[[1]], "Error: A valid data object <TEST> does NOT exist in ALL specified data sources")
expect_length(res$return.message[[2]], 1)
expect_equal(res$return.message[[2]], "It is either ABSENT and/or has no valid content/class, for details see return.info above")
})
#
# Done
#
context("ds.testObjExists::smk::shutdown")
test_that("shutdown", {
ds_expect_variables(c("D", "dataframe.newobj"))
})
disconnect.studies.dataset.cnsim()
context("ds.testObjExists::smk::done")