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@dib-lab

The Lab for Data Intensive Biology

Previously "Genomics, Evolution, and Development Lab" @ Michigan State University

The Lab for Data Intensive Biology at UC Davis

See http://ivory.idyll.org/lab/

In addition to the pinned repositories within dib-lab, we also work on and help maintain the following software:

sourmash, for rapid large-scale sequence search.

spacegraphcats, for querying large annoying metagenome assembly graphs.

Pinned

  1. khmer khmer Public

    In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

    Python 735 294

  2. charcoal charcoal Public

    Remove contaminated contigs from genomes using k-mers and taxonomies.

    Python 46 1

  3. genome-grist genome-grist Public

    map Illumina metagenomes to genomes!

    Jupyter Notebook 36 6

Repositories

Showing 10 of 169 repositories

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