Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

R session aborted, R encountered a fatal error #88

Closed
caonetto opened this issue Jul 6, 2021 · 2 comments
Closed

R session aborted, R encountered a fatal error #88

caonetto opened this issue Jul 6, 2021 · 2 comments

Comments

@caonetto
Copy link

caonetto commented Jul 6, 2021

Hi, first of all thanks for creating this package!
I am encountering a fatal error everytime I try to run pathfindR with the plot_enrichment_chart = TRUE option. I am using my own custom gene set (Saccharomyces cerevisiae) and it all runs smoothly as long as I dont try to plot the enrichment charts. I am not seeing any errors in the console prior to R freezing completely which forces me to terminate the session.
Any ideas what could be going on??

Thanks

@egeulgen
Copy link
Owner

egeulgen commented Jul 6, 2021

hey,
Thanks, glad you enjoy the package.
This might be related to an issue with ggplot2 or maybe an R issue in general (see rstudio/rstudio#9373, maybe try fixes suggested there?)

Could you share your sessionInfo()?

@caonetto
Copy link
Author

caonetto commented Jul 7, 2021

Thanks, fixed with the update of Rstudio!

@caonetto caonetto closed this as completed Jul 7, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants