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Workflow - Scientist #16

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@betatim

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@betatim

Outline the envisioned workflow for a scientist. With this we can build a better idea of what needs teaching, blue-printing, etc

First suggestion for a workflow:

  • start new data analysis by creating a empty directory
  • type openscience init to create a skeleton
    • runs git init, creates a "sensible" Dockerfile
    • setups up aliases for running things in the docker container?
  • create code, run it with openscience run <cmd> which executes it inside the docker container
  • create a notebook or .md with code blocks that has narrative mixed with steps for reproducing parts of the analysis
  • git commit all along
  • push repo to git hub at some point(?)
  • as analysis comes to an end create a new ipynb/md that is the paper, preview it with openscience paper(?)

(I will edit this entry as we iterate)

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