GitHub - fergalwalsh/Ratlab: A toolkit for the visualisation of rat brain images

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commits
atlas		atlas
images		images
LICENSE.txt		LICENSE.txt
README.txt		README.txt
alignImageUsingFeaturePoints.m		alignImageUsingFeaturePoints.m
alignImageUsingMoments.m		alignImageUsingMoments.m
angleBetweenPoints.m		angleBetweenPoints.m
atlas.txt		atlas.txt
atlas2.mat		atlas2.mat
autoGray2BW.m		autoGray2BW.m
bin_area.m		bin_area.m
bin_axis.m		bin_axis.m
bin_position.m		bin_position.m
createMask.m		createMask.m
extractImage.m		extractImage.m
findVPoint.m		findVPoint.m
findVentriclePoint.m		findVentriclePoint.m
getBoundingBox.m		getBoundingBox.m
getFilenames.m		getFilenames.m
getImageCenter.m		getImageCenter.m
preprocessImage.m		preprocessImage.m
ratlab.fig		ratlab.fig
ratlab.m		ratlab.m
readImagesToMatrix.m		readImagesToMatrix.m
readSingleImage.m		readSingleImage.m

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Ratlab - A toolkit for the visualisation of rat brain images.

This software was an undergraduate project at the Department of Computer Science, NUI Maynooth in 2008. 

Run as: ratlab images/


The software expects to find figures 41 - 80 from [1] in the the atlas/ directory named RBSC5_Black_041.png ...RBSC5_Black_080.png. These files are not included here for copyright reasons but can be found on the CD accompanying [1].


[1] Paxinos, G., and Watson, C. (2005). The rat brain in stereotaxic coordinates. 5th Edition. (San Diego, Elsevier Academic Press).




Acknowledgements

John Mc Donald (Department of Computer Science, NUI Maynooth)
Sean Commins (Department of Psychology, NUI Maynooth)

Sample brain slice images provided courtesy of Sean Commins