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4 | 4 | % WALLTIME 00:10:00
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5 | 5 | % DEPENDENCY findcluster clusterstat ft_statistics_montecarlo
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6 | 6 |
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| 7 | +%%%%%%%%5 |
| 8 | +% some code -> this relates to issue 1732 |
| 9 | +pattern = [... |
| 10 | + 1 1 1 1 0 1 1 1 1 1;... |
| 11 | + 1 0 0 0 0 0 0 1 0 0;... |
| 12 | + 1 1 1 0 0 0 0 1 0 0;... |
| 13 | + 1 0 0 0 0 0 0 1 0 0;... |
| 14 | + 1 0 0 0 0 0 0 1 0 0;... |
| 15 | + ]; % FT |
| 16 | + |
| 17 | +%% 0D (per channel) |
| 18 | +% make fake dataset |
| 19 | +data = cell(1,10); |
| 20 | +for idat = 1:10 |
| 21 | + data{idat}.label = {'ch1' 'ch2' 'ch3' 'ch4' 'ch5'}'; |
| 22 | + data{idat}.dimord = 'chan_freq'; |
| 23 | + data{idat}.parameter = rand(5,1); |
| 24 | + if idat <= 5 |
| 25 | + data{idat}.parameter = data{idat}.parameter + 2*pattern(:,2); |
| 26 | + end |
| 27 | +end |
| 28 | + |
| 29 | +% do stats - montecarlo |
| 30 | +cfg = []; |
| 31 | +cfg.method = 'montecarlo'; |
| 32 | +cfg.statistic = 'ft_statfun_depsamplesT'; |
| 33 | +cfg.alpha = 0.05; |
| 34 | +cfg.numrandomization = 'all'; |
| 35 | +cfg.design = [ones(1,5) ones(1,5).*2; 1:5 1:5;]; |
| 36 | +cfg.ivar = 1; |
| 37 | +cfg.uvar = 2; |
| 38 | + |
| 39 | +% - data |
| 40 | +cfg.parameter = 'parameter'; |
| 41 | +cfg.channel = data{1}.label; |
| 42 | +cfg.connectivity = [... |
| 43 | + false true false false false;... |
| 44 | + true false false false false;... |
| 45 | + false false false true false;... |
| 46 | + false false true false false;... |
| 47 | + false false false false false;... |
| 48 | + ]; % neighbours: ch1 - ch2, ch3 - ch4 |
| 49 | + |
| 50 | +cfg.dim = size(data{1}.(cfg.parameter)); |
| 51 | +cfg.dimord = data{1}.dimord; |
| 52 | +dat = cell2mat(cellfun(@(x) x.(cfg.parameter)(:), data, 'UniformOutput', false)); |
| 53 | + |
| 54 | +% - run |
| 55 | +cfg.correctm = 'cluster'; |
| 56 | +stat = ft_statistics_montecarlo(cfg,dat,cfg.design); |
| 57 | +cfg.correctm = 'tfce'; |
| 58 | +stat = ft_statistics_montecarlo(cfg,dat,cfg.design); |
| 59 | + |
| 60 | + |
| 61 | +%%%%%%%%%%%%%5 |
| 62 | +% some other code |
| 63 | + |
| 64 | + |
7 | 65 | pattern = [...
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8 | 66 | 1 1 1 1 0 1 1 1 1 1;...
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9 | 67 | 1 0 0 0 0 0 0 1 0 0;...
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