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taxator: decrease memory usage when sequences are not split #36

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fungs opened this issue Apr 16, 2015 · 0 comments
Open

taxator: decrease memory usage when sequences are not split #36

fungs opened this issue Apr 16, 2015 · 0 comments

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@fungs
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fungs commented Apr 16, 2015

When running taxator on large samples with segmentation disabled, then memory fills up quite easily due to the in-memory holding of sequences. We should see whether we can generally decrease the memory footprint maybe by re-loading sequence every time they are needed or just in some cases. It could be made a command line option.

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