Update bedtools to 2.28.0

galaxyproject · Sep 6, 2019 · 2962180 · 2962180
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commit 2962180
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Showing 8 changed files with 8 additions and 8 deletions.
diff --git a/tools/bedtools/annotateBed.xml b/tools/bedtools/annotateBed.xml
@@ -1,4 +1,4 @@
-<tool id="bedtools_annotatebed" name="bedtools AnnotateBed" version="@TOOL_VERSION@+galaxy1">
+<tool id="bedtools_annotatebed" name="bedtools AnnotateBed" version="@TOOL_VERSION@">
     <description>annotate coverage of features from multiple files</description>
     <macros>
         <import>macros.xml</import>

diff --git a/tools/bedtools/coverageBed.xml b/tools/bedtools/coverageBed.xml
@@ -1,4 +1,4 @@
-<tool id="bedtools_coveragebed" name="bedtools Compute both the depth and breadth of coverage" version="@TOOL_VERSION@+galaxy1">
+<tool id="bedtools_coveragebed" name="bedtools Compute both the depth and breadth of coverage" version="@TOOL_VERSION@">
     <description>of features in file B on the features in file A (bedtools coverage)</description>
     <macros>
         <import>macros.xml</import>

diff --git a/tools/bedtools/fisherBed.xml b/tools/bedtools/fisherBed.xml
@@ -1,4 +1,4 @@
-<tool id="bedtools_fisher" name="bedtools FisherBed" version="@TOOL_VERSION@+galaxy1">
+<tool id="bedtools_fisher" name="bedtools FisherBed" version="@TOOL_VERSION@">
     <description>calculate Fisher statistic between two feature files</description>
     <macros>
         <import>macros.xml</import>

diff --git a/tools/bedtools/intersectBed.xml b/tools/bedtools/intersectBed.xml
@@ -1,4 +1,4 @@
-<tool id="bedtools_intersectbed" name="bedtools Intersect intervals" version="@TOOL_VERSION@+galaxy1">
+<tool id="bedtools_intersectbed" name="bedtools Intersect intervals" version="@TOOL_VERSION@">
     <description>find overlapping intervals in various ways</description>
     <macros>
         <import>macros.xml</import>

diff --git a/tools/bedtools/jaccardBed.xml b/tools/bedtools/jaccardBed.xml
@@ -1,4 +1,4 @@
-<tool id="bedtools_jaccard" name="bedtools JaccardBed" version="@TOOL_VERSION@+galaxy1">
+<tool id="bedtools_jaccard" name="bedtools JaccardBed" version="@TOOL_VERSION@">
     <description>calculate the distribution of relative distances between two files</description>
     <macros>
         <import>macros.xml</import>

diff --git a/tools/bedtools/macros.xml b/tools/bedtools/macros.xml
@@ -5,7 +5,7 @@
             <yield/>
         </requirements>
     </xml>
-    <token name="@TOOL_VERSION@">2.27.1</token>
+    <token name="@TOOL_VERSION@">2.28.0</token>
     <token name="@SAMTOOLS_VERSION@">1.9</token>
     <token name="@STD_BEDTOOLS_INPUTS@">bed,bedgraph,gff,vcf</token>
     <token name="@STD_BEDTOOLS_INPUT_LABEL@">BED/bedGraph/GFF/VCF</token>

diff --git a/tools/bedtools/multiIntersectBed.xml b/tools/bedtools/multiIntersectBed.xml
@@ -1,4 +1,4 @@
-<tool id="bedtools_multiintersectbed" name="bedtools Multiple Intersect" version="@TOOL_VERSION@+galaxy1">
+<tool id="bedtools_multiintersectbed" name="bedtools Multiple Intersect" version="@TOOL_VERSION@">
     <description>identifies common intervals among multiple interval files</description>
     <macros>
         <import>macros.xml</import>

diff --git a/tools/bedtools/tagBed.xml b/tools/bedtools/tagBed.xml
@@ -1,4 +1,4 @@
-<tool id="bedtools_tagbed" name="bedtools TagBed" version="@TOOL_VERSION@+galaxy1">
+<tool id="bedtools_tagbed" name="bedtools TagBed" version="@TOOL_VERSION@">
     <description>tag BAM alignments based on overlaps with interval files</description>
     <macros>
         <import>macros.xml</import>