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TIFFImageReader.java
2968 lines (2474 loc) · 145 KB
/
TIFFImageReader.java
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/*
* Copyright (c) 2012, Harald Kuhr
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* * Redistributions of source code must retain the above copyright notice, this
* list of conditions and the following disclaimer.
*
* * Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* * Neither the name of the copyright holder nor the names of its
* contributors may be used to endorse or promote products derived from
* this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
* DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
* FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
* DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
* SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
* CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
* OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
* OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
package com.twelvemonkeys.imageio.plugins.tiff;
import com.twelvemonkeys.imageio.ImageReaderBase;
import com.twelvemonkeys.imageio.color.CIELabColorConverter;
import com.twelvemonkeys.imageio.color.CIELabColorConverter.Illuminant;
import com.twelvemonkeys.imageio.color.ColorProfiles;
import com.twelvemonkeys.imageio.color.ColorSpaces;
import com.twelvemonkeys.imageio.color.YCbCrConverter;
import com.twelvemonkeys.imageio.metadata.CompoundDirectory;
import com.twelvemonkeys.imageio.metadata.Directory;
import com.twelvemonkeys.imageio.metadata.Entry;
import com.twelvemonkeys.imageio.metadata.iptc.IPTCReader;
import com.twelvemonkeys.imageio.metadata.jpeg.JPEG;
import com.twelvemonkeys.imageio.metadata.psd.PSD;
import com.twelvemonkeys.imageio.metadata.psd.PSDReader;
import com.twelvemonkeys.imageio.metadata.tiff.Half;
import com.twelvemonkeys.imageio.metadata.tiff.Rational;
import com.twelvemonkeys.imageio.metadata.tiff.TIFF;
import com.twelvemonkeys.imageio.metadata.tiff.TIFFReader;
import com.twelvemonkeys.imageio.metadata.xmp.XMPReader;
import com.twelvemonkeys.imageio.stream.ByteArrayImageInputStream;
import com.twelvemonkeys.imageio.stream.DirectImageInputStream;
import com.twelvemonkeys.imageio.stream.SubImageInputStream;
import com.twelvemonkeys.imageio.util.IIOUtil;
import com.twelvemonkeys.imageio.util.ImageTypeSpecifiers;
import com.twelvemonkeys.imageio.util.ProgressListenerBase;
import com.twelvemonkeys.io.FastByteArrayOutputStream;
import com.twelvemonkeys.io.FileUtil;
import com.twelvemonkeys.io.enc.DecoderStream;
import com.twelvemonkeys.io.enc.PackBitsDecoder;
import com.twelvemonkeys.lang.StringUtil;
import org.w3c.dom.NodeList;
import javax.imageio.IIOException;
import javax.imageio.ImageIO;
import javax.imageio.ImageReadParam;
import javax.imageio.ImageReader;
import javax.imageio.ImageTypeSpecifier;
import javax.imageio.event.IIOReadWarningListener;
import javax.imageio.metadata.IIOMetadata;
import javax.imageio.metadata.IIOMetadataNode;
import javax.imageio.plugins.jpeg.JPEGImageReadParam;
import javax.imageio.spi.ImageReaderSpi;
import javax.imageio.stream.ImageInputStream;
import java.awt.*;
import java.awt.color.*;
import java.awt.image.*;
import java.io.ByteArrayInputStream;
import java.io.DataInput;
import java.io.DataOutputStream;
import java.io.File;
import java.io.IOException;
import java.io.InputStream;
import java.io.SequenceInputStream;
import java.lang.reflect.Method;
import java.nio.ByteBuffer;
import java.nio.ByteOrder;
import java.nio.charset.StandardCharsets;
import java.util.Arrays;
import java.util.Collections;
import java.util.HashSet;
import java.util.Iterator;
import java.util.LinkedHashSet;
import java.util.Set;
import java.util.zip.InflaterInputStream;
import static com.twelvemonkeys.imageio.util.IIOUtil.createStreamAdapter;
import static com.twelvemonkeys.imageio.util.IIOUtil.subsampleRow;
import static java.util.Arrays.asList;
/**
* ImageReader implementation for Aldus/Adobe Tagged Image File Format (TIFF).
* <p>
* The reader is supposed to be fully "Baseline TIFF" compliant, and supports the following image types:
* </p>
* <ul>
* <li>Class B (Bi-level), all relevant compression types, 1 bit per sample</li>
* <li>Class G (Gray), all relevant compression types, 2, 4, 8, 16 or 32 bits per sample, unsigned integer</li>
* <li>Class P (Palette/indexed color), all relevant compression types, 1, 2, 4, 8 or 16 bits per sample, unsigned integer</li>
* <li>Class R (RGB), all relevant compression types, 8 or 16 bits per sample, unsigned integer</li>
* </ul>
* In addition, it supports many common TIFF extensions such as:
* <ul>
* <li>Tiling</li>
* <li>Class F (Facsimile), CCITT T.4 and T.6 compression (types 3 and 4), 1 bit per sample</li>
* <li>LZW Compression (type 5)</li>
* <li>"Old-style" JPEG Compression (type 6), as a best effort, as the spec is not well-defined</li>
* <li>JPEG Compression (type 7)</li>
* <li>ZLib (aka Adobe-style Deflate) Compression (type 8)</li>
* <li>Deflate Compression (type 32946)</li>
* <li>Horizontal differencing Predictor (type 2) for LZW, ZLib, Deflate and PackBits compression</li>
* <li>Alpha channel (ExtraSamples types 1/Associated Alpha and 2/Unassociated Alpha)</li>
* <li>Class S, CMYK data (PhotometricInterpretation type 5/Separated)</li>
* <li>Class Y, YCbCr data (PhotometricInterpretation type 6/YCbCr for both JPEG and other compressions</li>
* <li>Planar data (PlanarConfiguration type 2/Planar)</li>
* <li>ICC profiles (ICCProfile)</li>
* <li>BitsPerSample values up to 16 for most PhotometricInterpretations</li>
* <li>Multiple images (pages) in one file</li>
* </ul>
*
* @see <a href="http://partners.adobe.com/public/developer/tiff/index.html">Adobe TIFF developer resources</a>
* @see <a href="http://www.alternatiff.com/resources/TIFF6.pdf">TIFF 6.0 specification</a>
* @see <a href="http://en.wikipedia.org/wiki/Tagged_Image_File_Format">Wikipedia TIFF</a>
* @see <a href="http://www.awaresystems.be/imaging/tiff.html">AWare Systems TIFF pages</a>
*
* @author <a href="mailto:harald.kuhr@gmail.com">Harald Kuhr</a>
* @author last modified by $Author: haraldk$
* @version $Id: TIFFImageReader.java,v 1.0 08.05.12 15:14 haraldk Exp$
*/
public final class TIFFImageReader extends ImageReaderBase {
// TODOs ImageIO basic functionality:
// TODO: Thumbnail support (what is a TIFF thumbnail anyway? Photoshop way? Or use subfiletype?)
// TODOs ImageIO advanced functionality:
// TODO: Implement readAsRenderedImage to allow tiled RenderedImage?
// For some layouts, we could do reads super-fast with a memory mapped buffer.
// TODO: Implement readRaster directly (100% correctly)
// TODOs Extension support
// TODO: Auto-rotate based on Orientation
// TODO: Support Compression 34712 (JPEG2000)? Depends on JPEG2000 ImageReader
// TODO: Support Compression 34661 (JBIG)? Depends on JBIG ImageReader
// DONE:
// Handle SampleFormat
// Support Compression 6 ('Old-style' JPEG)
// Support Compression 2 (CCITT Modified Huffman RLE) for bi-level images
// Source region
// Subsampling
// IIOMetadata (stay close to Sun's TIFF metadata)
// http://download.java.net/media/jai-imageio/javadoc/1.1/com/sun/media/imageio/plugins/tiff/package-summary.html#ImageMetadata
// Support ICCProfile
// Support PlanarConfiguration 2
// Support Compression 3 & 4 (CCITT T.4 & T.6)
// Support ExtraSamples (an array, if multiple extra samples!)
// (0: Unspecified (not alpha), 1: Associated Alpha (pre-multiplied), 2: Unassociated Alpha (non-multiplied)
final static boolean DEBUG = "true".equalsIgnoreCase(System.getProperty("com.twelvemonkeys.imageio.plugins.tiff.debug"));
// NOTE: DO NOT MODIFY OR EXPOSE THIS ARRAY OUTSIDE PACKAGE!
static final double[] CCIR_601_1_COEFFICIENTS = new double[] {299.0 / 1000.0, 587.0 / 1000.0, 114.0 / 1000.0};
static final double[] REFERENCE_BLACK_WHITE_YCC_DEFAULT = new double[] {0, 255, 128, 255, 128, 255};
private CompoundDirectory IFDs;
private Directory currentIFD;
private int overrideCCITTCompression = -1;
TIFFImageReader(final ImageReaderSpi provider) {
super(provider);
}
@Override
protected void resetMembers() {
IFDs = null;
currentIFD = null;
overrideCCITTCompression = -1;
}
private void readMetadata() throws IOException {
if (imageInput == null) {
throw new IllegalStateException("input not set");
}
if (IFDs == null) {
IFDs = (CompoundDirectory) new TIFFReader().read(imageInput); // NOTE: Sets byte order as a side effect
if (DEBUG) {
System.err.println("Byte order: " + imageInput.getByteOrder());
System.err.println("Number of images: " + IFDs.directoryCount());
for (int i = 0; i < IFDs.directoryCount(); i++) {
System.err.printf("IFD %d: %s\n", i, IFDs.getDirectory(i));
}
Entry tiffXMP = IFDs.getEntryById(TIFF.TAG_XMP);
if (tiffXMP != null) {
byte[] value = (byte[]) tiffXMP.getValue();
// The XMPReader doesn't like null-termination...
int len = value.length;
for (int i = len - 1; i > 0; i--) {
if (value[i] == 0) {
len--;
}
else {
break;
}
}
Directory xmp = new XMPReader().read(new ByteArrayImageInputStream(value, 0, len));
System.err.println("-----------------------------------------------------------------------------");
System.err.println("xmp: " + xmp);
}
Entry tiffIPTC = IFDs.getEntryById(TIFF.TAG_IPTC);
if (tiffIPTC != null) {
Object value = tiffIPTC.getValue();
if (value instanceof short[]) {
System.err.println("short[]: " + value);
}
if (value instanceof long[]) {
// As seen in a Magick produced image...
System.err.println("long[]: " + value);
long[] longs = (long[]) value;
value = new byte[longs.length * 8];
ByteBuffer.wrap((byte[]) value).asLongBuffer().put(longs);
}
if (value instanceof float[]) {
System.err.println("float[]: " + value);
}
if (value instanceof double[]) {
System.err.println("double[]: " + value);
}
Directory iptc = new IPTCReader().read(new ByteArrayImageInputStream((byte[]) value));
System.err.println("-----------------------------------------------------------------------------");
System.err.println("iptc: " + iptc);
}
Entry tiffPSD = IFDs.getEntryById(TIFF.TAG_PHOTOSHOP);
if (tiffPSD != null) {
Directory psd = new PSDReader().read(new ByteArrayImageInputStream((byte[]) tiffPSD.getValue()));
System.err.println("-----------------------------------------------------------------------------");
System.err.println("psd: " + psd);
}
Entry tiffPSD2 = IFDs.getEntryById(TIFF.TAG_PHOTOSHOP_IMAGE_SOURCE_DATA);
if (tiffPSD2 != null) {
byte[] value = (byte[]) tiffPSD2.getValue();
String foo = "Adobe Photoshop Document Data Block";
if (Arrays.equals(foo.getBytes(StandardCharsets.US_ASCII), Arrays.copyOf(value, foo.length()))) {
System.err.println("foo: " + foo);
int offset = foo.length() + 1;
ImageInputStream input = new ByteArrayImageInputStream(value, offset, value.length - offset);
// input.setByteOrder(ByteOrder.LITTLE_ENDIAN); // TODO: WHY???!
while (input.getStreamPosition() < value.length - offset) {
int resourceId = input.readInt();
if (resourceId != PSD.RESOURCE_TYPE) {
System.err.println("Not a PSD resource: " + resourceId);
break;
}
int resourceKey = input.readInt();
System.err.println("resourceKey: " + intToStr(resourceKey));
long resourceLength = input.readUnsignedInt();
System.err.println("resourceLength: " + resourceLength);
long pad = (4 - (resourceLength % 4)) % 4;
long resourceLengthPadded = resourceLength + pad; // Padded to 32 bit boundary, possibly 64 bit for 8B64 resources
long streamPosition = input.getStreamPosition();
if (resourceKey == ('L' << 24 | 'a' << 16 | 'y' << 8 | 'r')) {
short count = input.readShort();
System.err.println("layer count: " + count);
for (int layer = 0; layer < count; layer++) {
int top = input.readInt();
int left = input.readInt();
int bottom = input.readInt();
int right = input.readInt();
System.err.printf("%d, %d, %d, %d\n", top, left, bottom, right);
short channels = input.readShort();
System.err.println("channels: " + channels);
for (int channel = 0; channel < channels; channel++) {
short channelId = input.readShort();
System.err.println("channelId: " + channelId);
long channelLength = input.readUnsignedInt();
System.err.println("channelLength: " + channelLength);
}
System.err.println("8BIM: " + intToStr(input.readInt()));
int blendMode = input.readInt();
System.err.println("blend mode key: " + intToStr(blendMode));
int opacity = input.readUnsignedByte();
System.err.println("opacity: " + opacity);
int clipping = input.readUnsignedByte();
System.err.println("clipping: " + clipping);
byte flags = input.readByte();
System.err.printf("flags: 0x%02x\n", flags);
input.readByte(); // Pad
long layerExtraDataLength = input.readUnsignedInt();
long pos = input.getStreamPosition();
System.err.println("length: " + layerExtraDataLength);
long layerMaskSize = input.readUnsignedInt();
input.skipBytes(layerMaskSize);
long layerBlendingRangesSize = input.readUnsignedInt();
input.skipBytes(layerBlendingRangesSize);
String layerName = readPascalString(input);
System.err.println("layerName: " + layerName);
int mod = (layerName.length() + 1) % 4; // len + 1 for null-term
System.err.println("mod: " + mod);
if (mod != 0) {
input.skipBytes(4 - mod);
}
System.err.println("input.getStreamPosition(): " + input.getStreamPosition());
// TODO: More data here
System.err.println(TIFFReader.HexDump.dump(0, value, (int) (offset + input.getStreamPosition()), 64));
input.seek(pos + layerExtraDataLength);
}
// long len = input.readUnsignedInt();
// System.err.println("len: " + len);
//
// int count = input.readUnsignedShort();
// System.err.println("count: " + count);
System.err.println(TIFFReader.HexDump.dump(0, value, (int) (offset + input.getStreamPosition()), 64));
}
input.seek(streamPosition + resourceLengthPadded);
System.out.println("input.getStreamPosition(): " + input.getStreamPosition());
}
// Directory psd2 = new PSDReader().read(input);
// System.err.println("-----------------------------------------------------------------------------");
// System.err.println("psd2: " + psd2);
}
}
}
}
}
static String readPascalString(final DataInput pInput) throws IOException {
int length = pInput.readUnsignedByte();
if (length == 0) {
return "";
}
byte[] bytes = new byte[length];
pInput.readFully(bytes);
return StringUtil.decode(bytes, 0, bytes.length, "ASCII");
}
static String intToStr(int value) {
return new String(
new byte[]{
(byte) ((value & 0xff000000) >>> 24),
(byte) ((value & 0x00ff0000) >> 16),
(byte) ((value & 0x0000ff00) >> 8),
(byte) ((value & 0x000000ff))
}
);
}
private void readIFD(final int imageIndex) throws IOException {
readMetadata();
checkBounds(imageIndex);
currentIFD = IFDs.getDirectory(imageIndex);
overrideCCITTCompression = -1; // Reset override for next image
}
@Override
public int getNumImages(final boolean allowSearch) throws IOException {
readMetadata();
return IFDs.directoryCount();
}
private Number getValueAsNumberWithDefault(final int tag, final String tagName, final Number defaultValue) throws IIOException {
Entry entry = currentIFD.getEntryById(tag);
if (entry == null) {
if (defaultValue != null) {
return defaultValue;
}
throw new IIOException("Missing TIFF tag: " + (tagName != null ? tagName : tag));
}
return (Number) entry.getValue();
}
private long getValueAsLongWithDefault(final int tag, final String tagName, final Long defaultValue) throws IIOException {
return getValueAsNumberWithDefault(tag, tagName, defaultValue).longValue();
}
private long getValueAsLongWithDefault(final int tag, final Long defaultValue) throws IIOException {
return getValueAsLongWithDefault(tag, null, defaultValue);
}
private int getValueAsIntWithDefault(final int tag, final String tagName, final Integer defaultValue) throws IIOException {
return getValueAsNumberWithDefault(tag, tagName, defaultValue).intValue();
}
private int getValueAsIntWithDefault(final int tag, Integer defaultValue) throws IIOException {
return getValueAsIntWithDefault(tag, null, defaultValue);
}
private int getValueAsInt(final int tag, String tagName) throws IIOException {
return getValueAsIntWithDefault(tag, tagName, null);
}
@Override
public int getWidth(int imageIndex) throws IOException {
readIFD(imageIndex);
return getValueAsInt(TIFF.TAG_IMAGE_WIDTH, "ImageWidth");
}
@Override
public int getHeight(int imageIndex) throws IOException {
readIFD(imageIndex);
return getValueAsInt(TIFF.TAG_IMAGE_HEIGHT, "ImageHeight");
}
@Override
public ImageTypeSpecifier getRawImageType(int imageIndex) throws IOException {
readIFD(imageIndex);
int sampleFormat = getSampleFormat();
int planarConfiguration = getValueAsIntWithDefault(TIFF.TAG_PLANAR_CONFIGURATION, TIFFBaseline.PLANARCONFIG_CHUNKY);
int interpretation = getPhotometricInterpretationWithFallback();
int samplesPerPixel = getValueAsIntWithDefault(TIFF.TAG_SAMPLES_PER_PIXEL, 1);
int bitsPerSample = getBitsPerSample();
int dataType = getDataType(sampleFormat, bitsPerSample);
int opaqueSamplesPerPixel = getOpaqueSamplesPerPixel(interpretation);
// Spec says ExtraSamples are mandatory for extra samples, however known encoders
// (ie. SeaShore) writes ARGB TIFFs without ExtraSamples.
long[] extraSamples = getValueAsLongArray(TIFF.TAG_EXTRA_SAMPLES, "ExtraSamples", false);
if (extraSamples == null && samplesPerPixel > opaqueSamplesPerPixel) {
// TODO: Log warning!
// First extra is alpha, rest is "unspecified" (0)
extraSamples = new long[samplesPerPixel - opaqueSamplesPerPixel];
extraSamples[0] = TIFFBaseline.EXTRASAMPLE_UNASSOCIATED_ALPHA;
}
// Determine alpha
boolean hasAlpha = extraSamples != null
&& (extraSamples[0] == TIFFBaseline.EXTRASAMPLE_ASSOCIATED_ALPHA
|| extraSamples[0] == TIFFBaseline.EXTRASAMPLE_UNASSOCIATED_ALPHA);
boolean isAlphaPremultiplied = hasAlpha && extraSamples[0] == TIFFBaseline.EXTRASAMPLE_ASSOCIATED_ALPHA;
int significantSamples = opaqueSamplesPerPixel + (hasAlpha ? 1 : 0);
// Read embedded cs
ICC_Profile profile = getICCProfile();
ColorSpace cs;
switch (interpretation) {
// TIFF 6.0 baseline
case TIFFBaseline.PHOTOMETRIC_WHITE_IS_ZERO:
// WhiteIsZero
// We need special case to preserve WhiteIsZero for CCITT 1 bit encodings
// as some software will treat black/white runs as-is, regardless of photometric.
// Special handling is also in the normalizeColor method
if (significantSamples == 1 && bitsPerSample == 1) {
if (profile != null) {
processWarningOccurred("Ignoring embedded ICC color profile for Bi-level/Gray TIFF");
}
byte[] lut = new byte[] {-1, 0};
return ImageTypeSpecifier.createIndexed(lut, lut, lut, null, bitsPerSample, dataType);
}
// Otherwise, we'll handle this by inverting the values when reading
case TIFFBaseline.PHOTOMETRIC_BLACK_IS_ZERO:
// BlackIsZero
// Gray scale or B/W
switch (significantSamples) {
case 1:
// TIFF 6.0 Spec says: 1, 4 or 8 for baseline (1 for bi-level, 4/8 for gray)
// ImageTypeSpecifier supports 1, 2, 4, 8 or 16 bits per sample, we'll support 32 bits as well.
// (Chunky or planar makes no difference for a single channel).
if (profile != null && profile.getColorSpaceType() != ColorSpace.TYPE_GRAY) {
processWarningOccurred(String.format("Embedded ICC color profile (type %s), is incompatible with image data (GRAY/type 6). Ignoring profile.", profile.getColorSpaceType()));
profile = null;
}
cs = profile == null ? ColorSpace.getInstance(ColorSpace.CS_GRAY) : ColorSpaces.createColorSpace(profile);
if (cs == ColorSpace.getInstance(ColorSpace.CS_GRAY) && (bitsPerSample == 1 || bitsPerSample == 2 || bitsPerSample == 4 || bitsPerSample == 8 || bitsPerSample == 16 || bitsPerSample == 32)) {
return ImageTypeSpecifiers.createGrayscale(bitsPerSample, dataType);
}
else if (bitsPerSample == 1 || bitsPerSample == 2 || bitsPerSample == 4) {
// Use packed format for 1/2/4 bits
return ImageTypeSpecifiers.createPackedGrayscale(cs, bitsPerSample, dataType);
}
else if (bitsPerSample == 8 || bitsPerSample == 16 || bitsPerSample == 32) {
return createImageTypeSpecifier(TIFFBaseline.PLANARCONFIG_CHUNKY, cs, dataType, significantSamples, samplesPerPixel, false, false);
}
else if (bitsPerSample % 2 == 0) {
ColorModel colorModel = new ComponentColorModel(cs, new int[] {bitsPerSample}, false, false, Transparency.OPAQUE, dataType);
return new ImageTypeSpecifier(colorModel, colorModel.createCompatibleSampleModel(1, 1));
}
throw new IIOException(String.format("Unsupported BitsPerSample for Bi-level/Gray TIFF (expected 1, 2, 4, 8, 16 or 32): %d", bitsPerSample));
case 2:
// Gray + alpha. We'll support:
// * 8, 16 or 32 bits per sample
// * Associated (pre-multiplied) or unassociated (non-pre-multiplied) alpha
// * Chunky (interleaved) or planar (banded) data
if (profile != null && profile.getColorSpaceType() != ColorSpace.TYPE_GRAY) {
processWarningOccurred(String.format("Embedded ICC color profile (type %s), is incompatible with image data (GRAY/type 6). Ignoring profile.", profile.getColorSpaceType()));
profile = null;
}
cs = profile == null ? ColorSpace.getInstance(ColorSpace.CS_GRAY) : ColorSpaces.createColorSpace(profile);
if (cs == ColorSpace.getInstance(ColorSpace.CS_GRAY) && (bitsPerSample == 8 || bitsPerSample == 16 || bitsPerSample == 32)) {
switch (planarConfiguration) {
case TIFFBaseline.PLANARCONFIG_CHUNKY:
return ImageTypeSpecifiers.createGrayscale(bitsPerSample, dataType, isAlphaPremultiplied);
case TIFFExtension.PLANARCONFIG_PLANAR:
return ImageTypeSpecifiers.createBanded(cs, new int[] {0, 1}, new int[] {0, 0}, dataType, true, isAlphaPremultiplied);
}
}
else if (/*bitsPerSample == 1 || bitsPerSample == 2 || bitsPerSample == 4 ||*/ bitsPerSample == 8 || bitsPerSample == 16 || bitsPerSample == 32) {
// TODO: Should use packed format for 1/2/4 chunky.
// TODO: For 1/2/4 bit planar, we might need to fix while reading... Look at IFFImageReader?
return createImageTypeSpecifier(planarConfiguration, cs, dataType, significantSamples, samplesPerPixel, true, isAlphaPremultiplied);
}
throw new IIOException(String.format("Unsupported BitsPerSample for Gray + Alpha TIFF (expected 8, 16 or 32): %d", bitsPerSample));
default:
throw new IIOException(String.format("Unsupported SamplesPerPixel/BitsPerSample combination for Bi-level/Gray TIFF (expected 1/1, 1/2, 1/4, 1/8, 1/16 or 1/32, or 2/8, 2/16 or 2/32): %d/%d", samplesPerPixel, bitsPerSample));
}
case TIFFExtension.PHOTOMETRIC_YCBCR:
// JPEG reader will handle YCbCr to RGB for us, otherwise we'll convert while reading
// TODO: Sanity check that we have SamplesPerPixel == 3, BitsPerSample == [8,8,8] (or [16,16,16]) and Compression == 1 (none), 5 (LZW), or 6 (JPEG)
case TIFFBaseline.PHOTOMETRIC_RGB:
// RGB
if (profile != null && profile.getColorSpaceType() != ColorSpace.TYPE_RGB) {
processWarningOccurred(String.format("Embedded ICC color profile (type %s), is incompatible with image data (RGB/type 5). Ignoring profile.", profile.getColorSpaceType()));
profile = null;
}
cs = profile == null ? ColorSpace.getInstance(ColorSpace.CS_sRGB) : ColorSpaces.createColorSpace(profile);
switch (significantSamples) {
case 3:
if (bitsPerSample == 8 || bitsPerSample == 16 || bitsPerSample == 32) {
return createImageTypeSpecifier(planarConfiguration, cs, dataType, significantSamples, samplesPerPixel, false, false);
}
else if (bitsPerSample == 2 && planarConfiguration == TIFFBaseline.PLANARCONFIG_CHUNKY) {
return ImageTypeSpecifiers.createPacked(cs, 0x30, 0xC, 0x3, 0, DataBuffer.TYPE_BYTE, false);
}
else if (bitsPerSample == 4 && planarConfiguration == TIFFBaseline.PLANARCONFIG_CHUNKY) {
return ImageTypeSpecifiers.createPacked(cs, 0xF00, 0xF0, 0xF, 0, DataBuffer.TYPE_USHORT, false);
}
else if (bitsPerSample > 8 && bitsPerSample % 2 == 0) {
ColorModel colorModel = new ComponentColorModel(cs, new int[] {bitsPerSample, bitsPerSample, bitsPerSample}, false, false, Transparency.OPAQUE, dataType);
SampleModel sampleModel = planarConfiguration == TIFFBaseline.PLANARCONFIG_CHUNKY
? colorModel.createCompatibleSampleModel(1, 1)
: new BandedSampleModel(dataType, 1, 1, 3, new int[]{0, 1, 2}, new int[]{0, 0, 0});
return new ImageTypeSpecifier(colorModel, sampleModel);
}
case 4:
if (bitsPerSample == 8 || bitsPerSample == 16 || bitsPerSample == 32) {
return createImageTypeSpecifier(planarConfiguration, cs, dataType, significantSamples, samplesPerPixel, true, isAlphaPremultiplied);
}
else if (bitsPerSample == 2 && planarConfiguration == TIFFBaseline.PLANARCONFIG_CHUNKY) {
return ImageTypeSpecifiers.createPacked(cs, 0xC0, 0x30, 0xC, 0x3, DataBuffer.TYPE_BYTE, isAlphaPremultiplied);
}
else if (bitsPerSample == 4 && planarConfiguration == TIFFBaseline.PLANARCONFIG_CHUNKY) {
return ImageTypeSpecifiers.createPacked(cs, 0xF000, 0xF00, 0xF0, 0xF, DataBuffer.TYPE_USHORT, isAlphaPremultiplied);
}
default:
throw new IIOException(String.format("Unsupported SamplesPerPixel/BitsPerSample combination for RGB TIFF (expected 3 or 4/a multiple of 2): %d/%d", samplesPerPixel, bitsPerSample));
}
case TIFFBaseline.PHOTOMETRIC_PALETTE:
// Palette
if (samplesPerPixel != 1 && !(samplesPerPixel == 2 && extraSamples != null && extraSamples.length == 1)) {
throw new IIOException("Bad SamplesPerPixel value for Palette TIFF (expected 1): " + samplesPerPixel);
}
else if (bitsPerSample <= 0 || bitsPerSample > 16) {
throw new IIOException("Bad BitsPerSample value for Palette TIFF (expected <= 16): " + bitsPerSample);
}
// NOTE: If ExtraSamples is used, PlanarConfiguration must be taken into account also for pixel data
Entry colorMap = currentIFD.getEntryById(TIFF.TAG_COLOR_MAP);
if (colorMap == null) {
throw new IIOException("Missing ColorMap for Palette TIFF");
}
IndexColorModel icm = createIndexColorModel(bitsPerSample, dataType, (int[]) colorMap.getValue());
if (extraSamples != null) {
return ImageTypeSpecifiers.createDiscreteExtraSamplesIndexedFromIndexColorModel(icm, extraSamples.length, hasAlpha);
}
return ImageTypeSpecifiers.createFromIndexColorModel(icm);
case TIFFExtension.PHOTOMETRIC_SEPARATED:
// Separated (CMYK etc)
// Consult the 332/InkSet (1=CMYK, 2=Not CMYK; see InkNames), 334/NumberOfInks (def=4) and optionally 333/InkNames
// If "Not CMYK" we'll need an ICC profile to be able to display (in a useful way), readAsRaster should still work.
int inkSet = getValueAsIntWithDefault(TIFF.TAG_INK_SET, TIFFExtension.INKSET_CMYK);
int numberOfInks = getValueAsIntWithDefault(TIFF.TAG_NUMBER_OF_INKS, 4);
// Profile must be CMYK, OR color component must match NumberOfInks
if (inkSet != TIFFExtension.INKSET_CMYK && (profile == null || profile.getNumComponents() != numberOfInks)) {
throw new IIOException(String.format(
"Embedded ICC color profile for Photometric Separated is missing or is incompatible with image data: %s != NumberOfInks (%s).",
profile != null ? profile.getNumComponents() : "null", numberOfInks));
}
if (profile != null && inkSet == TIFFExtension.INKSET_CMYK && profile.getColorSpaceType() != ColorSpace.TYPE_CMYK) {
processWarningOccurred(String.format("Embedded ICC color profile (type %s), is incompatible with image data (CMYK/type 9). Ignoring profile.", profile.getColorSpaceType()));
profile = null;
}
cs = profile == null ? ColorSpaces.getColorSpace(ColorSpaces.CS_GENERIC_CMYK) : ColorSpaces.createColorSpace(profile);
switch (significantSamples) {
case 4:
case 5:
if (bitsPerSample == 8 || bitsPerSample == 16) {
return createImageTypeSpecifier(planarConfiguration, cs, dataType, significantSamples, samplesPerPixel, significantSamples == 5, isAlphaPremultiplied);
}
default:
throw new IIOException(
String.format("Unsupported SamplesPerPixel/BitsPerSample combination for Separated TIFF (expected 4/8, 4/16, 5/8 or 5/16): %d/%s", samplesPerPixel, bitsPerSample)
);
}
case TIFFExtension.PHOTOMETRIC_CIELAB:
case TIFFExtension.PHOTOMETRIC_ICCLAB:
case TIFFExtension.PHOTOMETRIC_ITULAB:
// TODO: Would probably be more correct to handle using a CIELabColorSpace for RAW type?
// L*a*b* color. Handled using conversion to sRGB
cs = ColorSpace.getInstance(ColorSpace.CS_sRGB);
switch (planarConfiguration) {
case TIFFBaseline.PLANARCONFIG_CHUNKY:
return createImageTypeSpecifier(TIFFBaseline.PLANARCONFIG_CHUNKY, cs, dataType, 3, samplesPerPixel, false, false);
case TIFFExtension.PLANARCONFIG_PLANAR:
// TODO: Reading works fine, but we can't convert the Lab values properly yet. Need to rewrite normalizeColor
//return ImageTypeSpecifiers.createBanded(cs, new int[] {0, 1, 2}, new int[] {0, 0, 0}, dataType, false, false);
default:
throw new IIOException(
String.format("Unsupported PlanarConfiguration for Lab color TIFF (expected 1): %d", planarConfiguration)
);
}
case TIFFBaseline.PHOTOMETRIC_MASK:
// Transparency mask
// TODO: Treat as grey?
case TIFFCustom.PHOTOMETRIC_LOGL:
case TIFFCustom.PHOTOMETRIC_LOGLUV:
// Log
case TIFFCustom.PHOTOMETRIC_CFA:
case TIFFCustom.PHOTOMETRIC_LINEAR_RAW:
// RAW (DNG)
throw new IIOException("Unsupported TIFF PhotometricInterpretation value: " + interpretation);
default:
throw new IIOException("Unknown TIFF PhotometricInterpretation value: " + interpretation);
}
}
private ImageTypeSpecifier createImageTypeSpecifier(int planarConfiguration, ColorSpace cs, int dataType, int significantSamples, int samplesPerPixel, boolean alpha, boolean alphaPremultiplied) throws IIOException {
switch (planarConfiguration) {
case TIFFBaseline.PLANARCONFIG_CHUNKY:
if (samplesPerPixel > significantSamples) {
return new ImageTypeSpecifier(
new ExtraSamplesColorModel(cs, alpha, alphaPremultiplied, dataType, samplesPerPixel - significantSamples),
new PixelInterleavedSampleModel(dataType, 1, 1, samplesPerPixel, samplesPerPixel, createOffsets(samplesPerPixel)));
}
return ImageTypeSpecifiers.createInterleaved(cs, createOffsets(significantSamples), dataType, alpha, alphaPremultiplied);
case TIFFExtension.PLANARCONFIG_PLANAR:
return ImageTypeSpecifiers.createBanded(cs, createOffsets(significantSamples), new int[significantSamples], dataType, alpha, alphaPremultiplied);
default:
throw new IIOException(String.format("Unsupported PlanarConfiguration (expected 1 or 2): %d", planarConfiguration));
}
}
private static int[] createOffsets(int samplesPerPixel) {
int[] offsets = new int[samplesPerPixel];
for (int i = 0; i < samplesPerPixel; i++) {
offsets[i] = i;
}
return offsets;
}
private int getPhotometricInterpretationWithFallback() throws IIOException {
// PhotometricInterpretation is a required tag, but as it can be guessed this does a fallback that is similar to JAI ImageIO.
int interpretation = getValueAsIntWithDefault(TIFF.TAG_PHOTOMETRIC_INTERPRETATION, "PhotometricInterpretation", -1);
if (interpretation == -1) {
int compression = getValueAsIntWithDefault(TIFF.TAG_COMPRESSION, TIFFBaseline.COMPRESSION_NONE);
int samplesPerPixel = getValueAsIntWithDefault(TIFF.TAG_SAMPLES_PER_PIXEL, 1);
Entry extraSamples = currentIFD.getEntryById(TIFF.TAG_EXTRA_SAMPLES);
Entry colorMap = currentIFD.getEntryById(TIFF.TAG_COLOR_MAP);
interpretation = guessPhotometricInterpretation(compression, samplesPerPixel, extraSamples, colorMap);
processWarningOccurred("Missing PhotometricInterpretation, determining fallback: " + interpretation);
}
return interpretation;
}
static int guessPhotometricInterpretation(int compression, int samplesPerPixel, Entry extraSamples, Entry colorMap) {
int extraSamplesCount = extraSamples == null ? 0 : extraSamples.valueCount();
if (compression == TIFFBaseline.COMPRESSION_CCITT_MODIFIED_HUFFMAN_RLE
|| compression == TIFFExtension.COMPRESSION_CCITT_T4
|| compression == TIFFExtension.COMPRESSION_CCITT_T6) {
return TIFFBaseline.PHOTOMETRIC_WHITE_IS_ZERO;
}
else if (colorMap != null) {
return TIFFBaseline.PHOTOMETRIC_PALETTE;
}
else if ((samplesPerPixel - extraSamplesCount) == 3) {
if (compression == TIFFExtension.COMPRESSION_JPEG
|| compression == TIFFExtension.COMPRESSION_OLD_JPEG) {
return TIFFExtension.PHOTOMETRIC_YCBCR;
}
else {
return TIFFBaseline.PHOTOMETRIC_RGB;
}
}
else if ((samplesPerPixel - extraSamplesCount) == 4) {
return TIFFExtension.PHOTOMETRIC_SEPARATED;
}
else {
return TIFFBaseline.PHOTOMETRIC_BLACK_IS_ZERO;
}
}
private int getOpaqueSamplesPerPixel(final int photometricInterpretation) throws IIOException {
switch (photometricInterpretation) {
case TIFFBaseline.PHOTOMETRIC_WHITE_IS_ZERO:
case TIFFBaseline.PHOTOMETRIC_BLACK_IS_ZERO:
case TIFFBaseline.PHOTOMETRIC_PALETTE:
case TIFFBaseline.PHOTOMETRIC_MASK:
return 1;
case TIFFBaseline.PHOTOMETRIC_RGB:
case TIFFExtension.PHOTOMETRIC_YCBCR:
case TIFFExtension.PHOTOMETRIC_CIELAB:
case TIFFExtension.PHOTOMETRIC_ICCLAB:
case TIFFExtension.PHOTOMETRIC_ITULAB:
return 3;
case TIFFExtension.PHOTOMETRIC_SEPARATED:
return getValueAsIntWithDefault(TIFF.TAG_NUMBER_OF_INKS, 4);
case TIFFCustom.PHOTOMETRIC_LOGL:
case TIFFCustom.PHOTOMETRIC_LOGLUV:
case TIFFCustom.PHOTOMETRIC_CFA:
case TIFFCustom.PHOTOMETRIC_LINEAR_RAW:
throw new IIOException("Unsupported TIFF PhotometricInterpretation value: " + photometricInterpretation);
default:
throw new IIOException("Unknown TIFF PhotometricInterpretation value: " + photometricInterpretation);
}
}
private int getDataType(int sampleFormat, int bitsPerSample) throws IIOException {
switch (sampleFormat) {
case TIFFExtension.SAMPLEFORMAT_UNDEFINED:
// Spec says:
// A field value of “undefined” is a statement by the writer that it did not know how
// to interpret the data samples; for example, if it were copying an existing image. A
// reader would typically treat an image with “undefined” data as if the field were
// not present (i.e. as unsigned integer data).
case TIFFBaseline.SAMPLEFORMAT_UINT:
return bitsPerSample <= 8 ? DataBuffer.TYPE_BYTE : bitsPerSample <= 16 ? DataBuffer.TYPE_USHORT : DataBuffer.TYPE_INT;
case TIFFExtension.SAMPLEFORMAT_INT:
switch (bitsPerSample) {
case 8:
return DataBuffer.TYPE_BYTE;
case 16:
return DataBuffer.TYPE_SHORT;
case 32:
return DataBuffer.TYPE_INT;
}
throw new IIOException("Unsupported BitsPerSample for SampleFormat 2/Signed Integer (expected 8/16/32): " + bitsPerSample);
case TIFFExtension.SAMPLEFORMAT_FP:
if (bitsPerSample == 16 || bitsPerSample == 32) {
return DataBuffer.TYPE_FLOAT;
}
throw new IIOException("Unsupported BitsPerSample for SampleFormat 3/Floating Point (expected 16/32): " + bitsPerSample);
default:
throw new IIOException("Unknown TIFF SampleFormat (expected 1, 2, 3 or 4): " + sampleFormat);
}
}
private IndexColorModel createIndexColorModel(final int bitsPerSample, final int dataType, final int[] cmapShort) {
// According to the spec, there should be exactly 3 * bitsPerSample^2 entries in the color map for TIFF.
// Should we enforce this?
int[] cmap = new int[cmapShort.length / 3];
// We'll detect whether the color map data is 8 bit, rather than 16 bit while converting
boolean cmapIs8Bit = true;
// All reds, then greens, and finally blues
for (int i = 0; i < cmap.length; i++) {
cmap[i] = (cmapShort[i ] / 256) << 16
| (cmapShort[i + cmap.length] / 256) << 8
| (cmapShort[i + 2 * cmap.length] / 256);
if (cmapIs8Bit && cmap[i] != 0) {
cmapIs8Bit = false;
}
}
if (cmapIs8Bit) {
// This color map is using only the lower 8 bits, making the image all black.
// We'll create a new color map, based on the non-scaled 8 bit values.
processWarningOccurred("8 bit ColorMap detected.");
// All reds, then greens, and finally blues
for (int i = 0; i < cmap.length; i++) {
cmap[i] = (cmapShort[i ]) << 16
| (cmapShort[i + cmap.length]) << 8
| (cmapShort[i + 2 * cmap.length]);
}
}
return new IndexColorModel(bitsPerSample, cmap.length, cmap, 0, false, -1, dataType);
}
private int getSampleFormat() throws IIOException {
long[] value = getValueAsLongArray(TIFF.TAG_SAMPLE_FORMAT, "SampleFormat", false);
if (value != null) {
long sampleFormat = value[0];
for (int i = 1; i < value.length; i++) {
if (value[i] != sampleFormat) {
throw new IIOException("Variable TIFF SampleFormat not supported: " + Arrays.toString(value));
}
}
return (int) sampleFormat;
}
// The default
return TIFFBaseline.SAMPLEFORMAT_UINT;
}
private int getBitsPerSample() throws IIOException {
long[] value = getValueAsLongArray(TIFF.TAG_BITS_PER_SAMPLE, "BitsPerSample", false);
if (value == null || value.length == 0) {
return 1;
}
else {
int bitsPerSample = (int) value[0];
if (value.length == 3 && (value[0] == 5 && value[1] == 6 && value[2] == 5)) {
// Special case for UINT_565. We're good.
}
else {
for (int i = 1; i < value.length; i++) {
if (value[i] != bitsPerSample) {
throw new IIOException("Variable BitsPerSample not supported: " + Arrays.toString(value));
}
}
}
return bitsPerSample;
}
}
@Override
public Iterator<ImageTypeSpecifier> getImageTypes(int imageIndex) throws IOException {
readIFD(imageIndex);
ImageTypeSpecifier rawType = getRawImageType(imageIndex);
Set<ImageTypeSpecifier> specs = new LinkedHashSet<>(5);
// TODO: Based on raw type, we can probably convert to most RGB types at least, maybe gray etc
if (rawType.getColorModel().getColorSpace().isCS_sRGB()) {
if (rawType.getNumBands() == 3 && rawType.getBitsPerBand(0) == 8) {
specs.add(ImageTypeSpecifier.createFromBufferedImageType(BufferedImage.TYPE_3BYTE_BGR));
// specs.add(ImageTypeSpecifier.createFromBufferedImageType(BufferedImage.TYPE_INT_BGR));
// specs.add(ImageTypeSpecifier.createFromBufferedImageType(BufferedImage.TYPE_INT_RGB));
}
else if (rawType.getNumBands() == 4 && rawType.getBitsPerBand(0) == 8) {
specs.add(ImageTypeSpecifier.createFromBufferedImageType(BufferedImage.TYPE_4BYTE_ABGR));
// specs.add(ImageTypeSpecifier.createFromBufferedImageType(BufferedImage.TYPE_INT_ARGB));
specs.add(ImageTypeSpecifier.createFromBufferedImageType(BufferedImage.TYPE_4BYTE_ABGR_PRE));
}
}
specs.add(rawType);
return specs.iterator();
}
@Override
public BufferedImage read(int imageIndex, ImageReadParam param) throws IOException {
return read(imageIndex, param, true);
}
private BufferedImage read(int imageIndex, ImageReadParam param, boolean normalize) throws IOException {
readIFD(imageIndex);
int width = getWidth(imageIndex);
int height = getHeight(imageIndex);
BufferedImage destination = getDestination(param, getImageTypes(imageIndex), width, height);
ImageTypeSpecifier rawType = getRawImageType(imageIndex);
checkReadParamBandSettings(param, rawType.getNumBands(), destination.getSampleModel().getNumBands());
final Rectangle srcRegion = new Rectangle();
final Rectangle dstRegion = new Rectangle();
computeRegions(param, width, height, destination, srcRegion, dstRegion);
int xSub = param != null ? param.getSourceXSubsampling() : 1;
int ySub = param != null ? param.getSourceYSubsampling() : 1;
WritableRaster destRaster = clipToRect(destination.getRaster(), dstRegion, param != null ? param.getDestinationBands() : null);
final int interpretation = getPhotometricInterpretationWithFallback();
final int compression = getValueAsIntWithDefault(TIFF.TAG_COMPRESSION, TIFFBaseline.COMPRESSION_NONE);
final int predictor = getValueAsIntWithDefault(TIFF.TAG_PREDICTOR, 1);
final int planarConfiguration = getValueAsIntWithDefault(TIFF.TAG_PLANAR_CONFIGURATION, TIFFBaseline.PLANARCONFIG_CHUNKY);
final int samplesInTile = planarConfiguration == TIFFExtension.PLANARCONFIG_PLANAR ? 1 : rawType.getNumBands();
// NOTE: We handle strips as tiles of tileWidth == width by tileHeight == rowsPerStrip
// Strips are top/down, tiles are left/right, top/down
int stripTileWidth = width;
long rowsPerStrip = getValueAsLongWithDefault(TIFF.TAG_ROWS_PER_STRIP, (long) Integer.MAX_VALUE);
int stripTileHeight = rowsPerStrip < height ? (int) rowsPerStrip : height;
long[] stripTileOffsets = getValueAsLongArray(TIFF.TAG_TILE_OFFSETS, "TileOffsets", false);
long[] stripTileByteCounts;
if (stripTileOffsets != null) {
stripTileByteCounts = getValueAsLongArray(TIFF.TAG_TILE_BYTE_COUNTS, "TileByteCounts", false);
if (stripTileByteCounts == null) {
processWarningOccurred("Missing TileByteCounts for tiled TIFF with compression: " + compression);
}
else if (stripTileByteCounts.length == 0 || containsZero(stripTileByteCounts)) {
stripTileByteCounts = null;
processWarningOccurred("Ignoring all-zero TileByteCounts for tiled TIFF with compression: " + compression);
}
stripTileWidth = getValueAsInt(TIFF.TAG_TILE_WIDTH, "TileWidth");
stripTileHeight = getValueAsInt(TIFF.TAG_TILE_HEIGTH, "TileHeight");
}
else {
stripTileOffsets = getValueAsLongArray(TIFF.TAG_STRIP_OFFSETS, "StripOffsets", true);
stripTileByteCounts = getValueAsLongArray(TIFF.TAG_STRIP_BYTE_COUNTS, "StripByteCounts", false);
if (stripTileByteCounts == null) {
processWarningOccurred("Missing StripByteCounts for TIFF with compression: " + compression);
}
else if (stripTileByteCounts.length == 0 || containsZero(stripTileByteCounts)) {
stripTileByteCounts = null;
processWarningOccurred("Ignoring all-zero StripByteCounts for TIFF with compression: " + compression);
}
// NOTE: This is really against the spec, but libTiff seems to handle it. TIFF 6.0 says:
// "Do not use both strip- oriented and tile-oriented fields in the same TIFF file".
stripTileWidth = getValueAsIntWithDefault(TIFF.TAG_TILE_WIDTH, "TileWidth", stripTileWidth);
stripTileHeight = getValueAsIntWithDefault(TIFF.TAG_TILE_HEIGTH, "TileHeight", stripTileHeight);
}
int tilesAcross = (width + stripTileWidth - 1) / stripTileWidth;