# To change this template, choose Tools | Templates
# and open the template in the editor.
from reportlab.pdfgen import canvas
from reportlab.lib.pagesizes import letter
from reportlab.lib.units import inch,mm
import well
class Platepdfwriter():
scale_mult_x = 3.5
scale_mult_y = 1.6
fontsize_to_fit = 6
mydicts = {}
alphas = ["A","B","C","D","E","F","G","H"]
mynums = [1,2,3,4,5,6,7,8,9,10,11,12]
def __init__(self,filename):
self.filename = filename
self.canvas_obj = canvas.Canvas(self.filename,pagesize=letter)
self.canvas_obj.grid(self.make_listx(),self.make_listy())
self.label_axes()
self.canvas_obj.setFont("Times-Roman", self.fontsize_to_fit)
def label_axes(self):
count = 0
cx = self.make_listx()
cy = self.make_listy()
for val in cx[:-1]:
self.canvas_obj.rotate(90)
self.canvas_obj.drawString(30,-40+(-val*0.35*mm),u"%s" % self.alphas[count])
count = count + 1
self.canvas_obj.rotate(-90)
count = 0
for val in cy[:-1]:
self.canvas_obj.rotate(90)
self.canvas_obj.drawString(val+5*mm,-60,u"%s" % self.mynums[count])
count = count + 1
self.canvas_obj.rotate(-90)
def make_listx(self):
xlist = []
for i in range(9):
xlist.append(inch*(i+1)*0.25*self.scale_mult_x)
# print xlist
return xlist
def make_listy(self):
ylist = []
for i in range(13):
ylist.append(inch*(i+1)*0.5*self.scale_mult_y)
# print ylist
return ylist
def gen_lists(self,masterplate):
vols = []
for solvent in well.Well.wellcomponentlist.componentfactory:
self.mydicts[solvent] = vols
for y in masterplate.alphas:
for x in masterplate.nums:
try:
vol = masterplate.getwell(y,x).wellcomponentdict[solvent]
self.mydicts[solvent].append("%s" % vol)
except KeyError, e:
self.mydicts[solvent].append("%s" % 0)
vols = []
print self.mydicts
def gen_verbose_pdf(self,masterplate):
pos = 1
for solvent in well.Well.wellcomponentlist.componentfactory:
if len (solvent) > 10:
printed_solvent = "".join(solvent.split())[:10]
else:
printed_solvent = solvent
for y in self.make_listy()[:-1]:
for x in self.make_listx()[:-1]:
xplate = masterplate.nums[self.make_listy().index(y)]
yplate = masterplate.alphas[self.make_listx().index(x)]
self.canvas_obj.rotate(90)
try:
self.canvas_obj.drawString(y+1*mm,-x-3*pos*mm,u"%s,%.1f\xB5l" % (printed_solvent,masterplate.getwell(yplate,xplate).wellcomponentdict[solvent]))
except KeyError, e:
self.canvas_obj.drawString(y+1*mm,-x-3*pos*mm,u"%s,%.1f\xB5l" % (printed_solvent,0))
self.canvas_obj.rotate(-90)
pos = pos + 1
self.canvas_obj.showPage()
self.canvas_obj.save()
def gen_pdf_human(self,masterplate):
import os
clabel_x = range(10,700,int(700/6))
print clabel_x
self.canvas_obj.rotate(90)
self.canvas_obj.drawString(10,-10,"DispenseFilePrefix: %s" % str(os.path.splitext(self.filename)[0] ))
self.canvas_obj.rotate(-90)
pos = 1
component_data_written = []
import buffercomponent
component_poscount = 0
newline = 0
for y in self.make_listy()[:-1]:
for x in self.make_listx()[:-1]:
plate_num = masterplate.nums[self.make_listy().index(y)]
plate_alpha = masterplate.alphas[self.make_listx().index(x)]
mywell = masterplate.getwell(plate_alpha,plate_num)
self.canvas_obj.rotate(90)
count = 0
phcalcer = []
for solvent in sorted(mywell.wellcomponentdict.keys()):
count = count + 1
if len (solvent) > 10:
printed_solvent = "".join(solvent.split())[:10]
else:
printed_solvent = solvent
try:
current_component = mywell.component_name_object_map[solvent]
if current_component not in component_data_written:
component_data_written.append(current_component)
try:
self.canvas_obj.setFont("Times-Roman", 5)
if component_poscount >= 6 :
component_poscount = component_poscount - 6
newline = 10
self.canvas_obj.drawString(clabel_x[component_poscount],-30 - newline,"Component:%s,%4.2f,%6.2f" % (current_component.name,current_component.stockconc,current_component.vol))
print newline,component_poscount,clabel_x[component_poscount],"Component:%s,%4.2f,%6.2f" % (current_component.name,current_component.stockconc,current_component.vol)
self.canvas_obj.setFont("Times-Roman", self.fontsize_to_fit)
component_poscount = component_poscount + 1
except IndexError, iex:
pass
else :
pass
conc = float(mywell.wellcomponentdict[solvent] * mywell.component_name_object_map[solvent].stockconc)/float(masterplate.volofeachwell)
self.canvas_obj.drawString(y+1*mm,-x-count*3.5*mm,u"%10s: %-6.2f" % (printed_solvent,conc))
except KeyError , k:
pass
if solvent in mywell.component_name_object_map.keys():
if isinstance(mywell.component_name_object_map[solvent],buffercomponent.SimpleBuffer):
phcalcer.append(mywell.component_name_object_map[solvent])
if len(phcalcer) == 2 :
# Calculate pH and then print to sheet
if phcalcer[0].pka != phcalcer[1].pka:
pass
else:
import math
numerator = phcalcer[0].get_conc_base()*mywell.wellcomponentdict[phcalcer[0].name] + phcalcer[1].get_conc_base()*mywell.wellcomponentdict[phcalcer[1].name]
denominator = phcalcer[0].get_conc_acid()*mywell.wellcomponentdict[phcalcer[0].name]+ phcalcer[1].get_conc_acid()*mywell.wellcomponentdict[phcalcer[1].name]
ph = phcalcer[0].pka + math.log10(numerator/ denominator)
count = count + 1
self.canvas_obj.drawString(y+1*mm,-x-count*3.5*mm,"ph final:%.2f" % ph)
# for solvent in mywell.wellcomponentdict:
# print solvent,mywell.wellcomponentdict[solvent]
# print y+1*mm,x-4*pos*mm
# self.canvas_obj.drawString(y+1*mm,-x-4*pos*mm,u"%s,%.1f\xB5l" % (solvent,mywell.wellcomponentdict[solvent]))
# pos = pos + 1
self.canvas_obj.rotate(-90)
self.canvas_obj.showPage()
self.canvas_obj.save()
def gen_pdf(self,masterplate):
pos = 1
import buffercomponent
for y in self.make_listy()[:-1]:
for x in self.make_listx()[:-1]:
plate_num = masterplate.nums[self.make_listy().index(y)]
plate_alpha = masterplate.alphas[self.make_listx().index(x)]
mywell = masterplate.getwell(plate_alpha,plate_num)
self.canvas_obj.rotate(90)
count = 0
phcalcer = []
for solvent in sorted(mywell.wellcomponentdict.keys()):
count = count + 1
if len (solvent) > 10:
printed_solvent = "".join(solvent.split())[:10]
else:
printed_solvent = solvent
self.canvas_obj.drawString(y+1*mm,-x-count*3.5*mm,u"%s,%.1f\xB5l" % (printed_solvent,mywell.wellcomponentdict[solvent]))
if solvent in mywell.component_name_object_map.keys():
if isinstance(mywell.component_name_object_map[solvent],buffercomponent.SimpleBuffer):
phcalcer.append(mywell.component_name_object_map[solvent])
if len(phcalcer) == 2 :
# Calculate pH and then print to sheet
if phcalcer[0].pka != phcalcer[1].pka:
pass
else:
import math
numerator = phcalcer[0].get_conc_base()*mywell.wellcomponentdict[phcalcer[0].name] + phcalcer[1].get_conc_base()*mywell.wellcomponentdict[phcalcer[1].name]
denominator = phcalcer[0].get_conc_acid()*mywell.wellcomponentdict[phcalcer[0].name]+ phcalcer[1].get_conc_acid()*mywell.wellcomponentdict[phcalcer[1].name]
ph = phcalcer[0].pka + math.log10(numerator/ denominator)
count = count + 1
self.canvas_obj.drawString(y+1*mm,-x-count*3.5*mm,"ph final:%.2f" % ph)
# for solvent in mywell.wellcomponentdict:
# print solvent,mywell.wellcomponentdict[solvent]
# print y+1*mm,x-4*pos*mm
# self.canvas_obj.drawString(y+1*mm,-x-4*pos*mm,u"%s,%.1f\xB5l" % (solvent,mywell.wellcomponentdict[solvent]))
# pos = pos + 1
self.canvas_obj.rotate(-90)
self.canvas_obj.showPage()
self.canvas_obj.save()
# c.grid([inch, 2*inch, 3*inch, 4*inch], [0.5*inch, inch, 1.5*inch, 2*inch, 2.5*inch])
