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Cellranger Data Loading #406

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bshim181 opened this issue Apr 11, 2024 · 1 comment
Open

Cellranger Data Loading #406

bshim181 opened this issue Apr 11, 2024 · 1 comment

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@bshim181
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While loading the cellranger data (10X), this is the error I encounter.

-- [4/14] Parsing "/jsimonlab/users/bshim/Shuntaro_scRNA_TCR/Pool142_Cellranger/Pool142_Pt1_R/outs/all_contig.bam.bai" -- Warning: line 1 appears to contain an embedded nulError in stri_trim_both(string) :
invalid UTF-8 byte sequence detected; try calling stri_enc_toutf8()

Where might this error arise from, and what would the be the solution to fix the issue in loading the dataset?

@annemarijnkramer
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I have run into the same issue, would appreciate help in getting it solved! Many thanks!

Error in stri_trim_both(string) :
invalid UTF-8 byte sequence detected; try calling stri_enc_toutf8()
In addition: Warning message:
In readLines(f, 1) : line 1 appears to contain an embedded nul

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