/
Makefile.am
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Makefile.am
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LIBDIR=@LIBDIR@
ACLOCAL_AMFLAGS = -I m4
SUBDIRS=doc src
RJVERABBR=$(PACKAGE_VERSION)-$(build)$(MPISEP)$(MPIINFIX)
RJVERABBREXE=$(RJVERABBR)$(EXEEXT)
RJBPVA="rjungle-bin-pkg-$(RJVERABBR)"
eintest:
echo $(MAKE_FOR_WINDOWS)
echo $(RJVERABBREXE)
dist-hook:
cp $(top_srcdir)/VERSION $(distdir)/
cp $(top_srcdir)/THANKS $(distdir)/
mkdir $(distdir)/tests
cp $(top_srcdir)/tests/data_from_r.dat $(distdir)/tests/
cp $(top_srcdir)/tests/test.ped $(distdir)/tests/
cp $(top_srcdir)/tests/test.dat $(distdir)/tests/
cp $(top_srcdir)/tests/check.* $(distdir)/tests/
cp $(top_srcdir)/src/$(LIBDIR)/error_codes.txt $(distdir)/src/$(LIBDIR)/
dist-internet: dist dist-internet-doc dist-internet-static
$(top_srcdir)/doc/putfilestoftp.sh randomjungle-$(PACKAGE_VERSION).tar.gz
dist-internet-doc: dist
cd $(top_srcdir)/doc && ./putfilestoftp.sh randomjungle.pdf
cd $(top_srcdir)/doc && ./putfilestoftp.sh randomjungle.html
cd $(top_srcdir)/doc && cp ../src/$(LIBDIR)/error_codes.txt . && ./putfilestoftp.sh error_codes.txt && rm error_codes.txt
cd $(top_srcdir)/doc && cp ../NEWS . && ./putfilestoftp.sh NEWS && rm NEWS
dist-internet-static:
mkdir -p $(top_srcdir)/$(RJBPVA)
mkdir -p $(distdir)/bin-pkg
cp -Rf $(top_srcdir)/pkgskeleton$(MPIINFIX)/* $(top_srcdir)/$(RJBPVA)/
find $(top_srcdir)/$(RJBPVA)/ -name .svn | xargs -IFILES rm -Rf FILES
if test "$(MAKE_FOR_WINDOWS)" == 'yes' ; then rm -f $(top_srcdir)/$(RJBPVA)/*.sh; else rm -f $(top_srcdir)/$(RJBPVA)/*.bat; rm -f $(top_srcdir)/$(RJBPVA)/bin/*.dll; fi
cp -Rf $(top_srcdir)/$(RJBPVA)/* $(distdir)/bin-pkg/
if test "$(MAKE_FOR_WINDOWS)" == 'yes' ; then cp $(top_srcdir)/src/rjunglesparse_static$(EXEEXT) $(top_srcdir)/$(RJBPVA)/bin/rjunglesparse$(EXEEXT) && cp $(top_srcdir)/src/rjungle_static$(EXEEXT) $(top_srcdir)/$(RJBPVA)/bin/rjungle$(EXEEXT); zip -r $(RJBPVA).zip $(top_srcdir)/$(RJBPVA); $(top_srcdir)/doc/putfilestoftp.sh $(RJBPVA).zip; else cp $(top_srcdir)/src/rjunglesparse_static$(EXEEXT) $(top_srcdir)/$(RJBPVA)/bin/rjunglesparse-$(RJVERABBREXE) && cp $(top_srcdir)/src/rjungle_static$(EXEEXT) $(top_srcdir)/$(RJBPVA)/bin/rjungle-$(RJVERABBREXE); ln -s rjunglesparse-$(RJVERABBREXE) $(top_srcdir)/$(RJBPVA)/bin/rjunglesparse && ln -s rjungle-$(RJVERABBREXE) $(top_srcdir)/$(RJBPVA)/bin/rjungle; tar -zcf $(RJBPVA).tar.gz $(top_srcdir)/$(RJBPVA); $(top_srcdir)/doc/putfilestoftp.sh $(RJBPVA).tar.gz; fi
check-am:
$(top_srcdir)/src/rjungle$(EXEEXT) -z 123 -f $(top_srcdir)/tests/test.ped -p -o $(top_srcdir)/tests/testa1
$(top_srcdir)/src/rjunglesparse$(EXEEXT) -z 123 -f $(top_srcdir)/tests/test.ped -p -o $(top_srcdir)/tests/testsparsea1
test "`diff $(top_srcdir)/tests/testa1.importance $(top_srcdir)/tests/testsparsea1.importance | wc | tr -s ' '`" = " 0 0 0"
$(top_srcdir)/src/rjungle$(EXEEXT) -z 123 -f $(top_srcdir)/tests/test.dat -D y -o $(top_srcdir)/tests/testa2
$(top_srcdir)/src/rjungle$(EXEEXT) --testlib
$(top_srcdir)/src/rjunglesparse$(EXEEXT) --testlib
$(top_srcdir)/src/rjungle$(EXEEXT) -z 123 -f $(top_srcdir)/tests/test.dat -D y -t1 -w2 -U1 -o $(top_srcdir)/tests/testjungle
test "`diff $(top_srcdir)/tests/check.importance $(top_srcdir)/tests/testjungle.importance | wc | tr -s ' '`" = " 0 0 0"
test "`diff $(top_srcdir)/tests/check.jungle.xml $(top_srcdir)/tests/testjungle.jungle.xml | wc | tr -s ' '`" = " 0 0 0"
$(top_srcdir)/src/rjungle$(EXEEXT) -z 123 -f $(top_srcdir)/tests/test.dat -D y -t1 -w2 -U1 -o $(top_srcdir)/tests/testpred -P $(top_srcdir)/tests/testjungle.jungle.xml
test "`diff $(top_srcdir)/tests/check.prediction $(top_srcdir)/tests/testpred.prediction | wc | tr -s ' '`" = " 0 0 0"
$(top_srcdir)/src/rjungle_static$(EXEEXT) -z 123 -f $(top_srcdir)/tests/test.ped -p -o $(top_srcdir)/tests/testb1
$(top_srcdir)/src/rjunglesparse_static$(EXEEXT) -z 123 -f $(top_srcdir)/tests/test.ped -p -o $(top_srcdir)/tests/testsparseb1
test "`diff $(top_srcdir)/tests/testb1.importance $(top_srcdir)/tests/testsparseb1.importance | wc | tr -s ' '`" = " 0 0 0"
$(top_srcdir)/src/rjungle_static$(EXEEXT) -z 123 -f $(top_srcdir)/tests/test.dat -D y -o $(top_srcdir)/tests/testb2
$(top_srcdir)/src/rjungle_static$(EXEEXT) --testlib
$(top_srcdir)/src/rjunglesparse_static$(EXEEXT) --testlib
$(top_srcdir)/src/rjungle_static$(EXEEXT) -z 123 -f $(top_srcdir)/tests/test.dat -D y -t1 -w2 -U1 -o $(top_srcdir)/tests/testjungle
test "`diff $(top_srcdir)/tests/check.importance $(top_srcdir)/tests/testjungle.importance | wc | tr -s ' '`" = " 0 0 0"
test "`diff $(top_srcdir)/tests/check.jungle.xml $(top_srcdir)/tests/testjungle.jungle.xml | wc | tr -s ' '`" = " 0 0 0"
$(top_srcdir)/src/rjungle_static$(EXEEXT) -z 123 -f $(top_srcdir)/tests/test.dat -D y -t1 -w2 -U1 -o $(top_srcdir)/tests/testpred -P $(top_srcdir)/tests/testjungle.jungle.xml
test "`diff $(top_srcdir)/tests/check.prediction $(top_srcdir)/tests/testpred.prediction | wc | tr -s ' '`" = " 0 0 0"
clean-am:
rm -f $(top_srcdir)/tests/test1.*
rm -f $(top_srcdir)/tests/test2.*
rm -Rf $(top_srcdir)/$(RJBPVA)