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project.clj
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project.clj
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(def version
"This is Git release tag like 'v0.10.0-5-gb2dae83e'."
(-> (clojure.java.shell/sh "git" "describe" "--always")
:out
clojure.string/trim))
(defn ?slurp
"Slurp that returns nil if file doesn't exist."
[f]
(try (slurp f) (catch java.io.FileNotFoundException _)))
(defn ?read-string
"clojure.edn/read-string that returns nil instead of throwing."
[s]
(try (clojure.edn/read-string s) (catch Throwable _)))
(def deploy-path
"Reads the :bluegenes-deploy-path key from envvar, config/dev/config.edn or
config/defaults/config.edn in order of decending precedence. This is only
used for development builds, which is why it doesn't cover all configuration
methods of yogthos/config."
(or (System/getenv "BLUEGENES_DEPLOY_PATH")
(some-> (or (?slurp "config/dev/config.edn")
(?slurp "config/defaults/config.edn"))
;; We don't want to throw here if something is wrong with the
;; configs as it will get validated anyways when BlueGenes starts
;; and with much better errors.
(?read-string) (:bluegenes-deploy-path))))
(defproject org.intermine/bluegenes "1.4.5"
:licence "LGPL-2.1-only"
:description "Bluegenes is a Clojure-powered user interface for InterMine, the biological data warehouse"
:url "http://www.intermine.org"
:dependencies [; Clojure
[org.clojure/clojure "1.10.1"]
[org.clojure/clojurescript "1.10.520"]
[org.clojure/core.async "1.0.567"]
[org.clojure/core.cache "0.8.2"]
; MVC
[re-frame "0.12.0"]
[day8.re-frame/http-fx "0.1.6"]
[day8.re-frame/async-flow-fx "0.1.0"]
[day8.re-frame/forward-events-fx "0.0.6"]
[day8.re-frame/undo "0.3.3"]
[reagent "0.10.0"]
[cljsjs/react-transition-group "1.2.0-0"
:exclusions [cljsjs/react cljsjs/react-dom]]
[hiccup "1.0.5"]
[prismatic/dommy "1.1.0"]
[metosin/reitit "0.5.12"]
[json-html "0.4.7"]
[markdown-to-hiccup "0.6.2"]
[cljsjs/react-day-picker "7.3.0-1"]
[cljsjs/react-select "2.4.4-0"]
; HTTP
[clj-http "3.10.0"]
[cljs-http "0.1.46"]
[compojure "1.6.2"]
[ring "1.8.2"]
[ring/ring-defaults "0.3.2"]
[cheshire "5.10.0"]
[metosin/ring-http-response "0.9.1"]
[metosin/muuntaja "0.6.7"]
; Build tools
[yogthos/config "1.1.7"]
; Utility libraries
[com.cognitect/transit-cljs "0.8.256"]
[com.andrewmcveigh/cljs-time "0.5.2"]
[inflections "0.13.2"]
[binaryage/oops "0.7.0"]
[inflections "0.13.2"]
[cljsjs/google-analytics "2017.09.21-0"]
[day8.re-frame/test "0.1.5"]
[cljs-bean "1.5.0"]
[org.clojure/data.xml "0.2.0-alpha6"]
[lambdaisland/uri "1.2.1"]
; Logging
[com.taoensso/timbre "4.10.0"]
[com.fzakaria/slf4j-timbre "0.3.19"]
; Intermine Assets
[org.intermine/imcljs "1.6.0"]
[org.intermine/im-tables "0.15.0"]
[org.intermine/bluegenes-tool-store "0.2.3"]]
:deploy-repositories {"clojars" {:sign-releases false}}
:codox {:language :clojurescript}
:plugins [[lein-cljsbuild "1.1.7"]
[org.clojure/core.unify "0.5.7"]
[lein-codox "0.10.5"]
[lein-ancient "0.6.15"]
[lein-pdo "0.1.1"]
[lein-cljfmt "0.6.1"]
[lein-shell "0.5.0"]
;; Populates .lein-env with a profile's :env map,
;; so they're accessible to config.
[lein-environ "1.2.0"]]
:cljfmt {:indents {wait-for [[:inner 0]]
cond-> [[:inner 0]]
cond->> [[:inner 0]]}}
:aliases ~(let [compile-less ["npx" "lessc" "less/site.less" "resources/public/css/site.css"]
compile-less-prod (conj compile-less "-x")
watch-less ["npx" "chokidar" "less/**/*.less" "-c" (clojure.string/join " " compile-less) "--initial"]
watch-less-silent (conj watch-less "--silent")]
{"assets" ["run" "-m" "bluegenes.prep/prepare-assets"]
"fingerprint-css" ["run" "-m" "bluegenes.prep/fingerprint-css"]
"dev" ["do" "clean," "assets,"
["pdo"
(into ["shell"] watch-less-silent)
["with-profile" "+repl" "run"]]]
"build" ["do" "clean," "assets,"
(into ["shell"] compile-less-prod)
["with-profile" "prod" "cljsbuild" "once" "min"]
"fingerprint-css"]
"prod" ["do" "build,"
["with-profile" "prod" "run"]]
"biotestmine" ["do" "build,"
["with-profile" "biotestmine" "run"]]
"deploy" ["with-profile" "+uberjar" "deploy" "clojars"]
"format" ["cljfmt" "fix"]
"kaocha" ["with-profile" "kaocha" "run" "-m" "kaocha.runner"]
"tools" ["run" "-m" "bluegenes-tool-store.tools"]
"less" ["do" "assets,"
(into ["shell"] watch-less)]})
:min-lein-version "2.8.1"
:source-paths ["src/clj" "src/cljs" "src/cljc" "src/workers" "script/"]
:test-paths ["test/cljs"]
:clean-targets ^{:protect false} ["resources/public/js/compiled" "target"
"out" "resources/public/css"
"test/js"]
:figwheel {:css-dirs ["resources/public/css"]
;:ring-handler bluegenes.handler/handler
:reload-clj-files {:cljc true}}
:repl-options {:nrepl-middleware [cider.piggieback/wrap-cljs-repl]
:init (-main)
:timeout 120000}
:profiles {:dev {:dependencies [[binaryage/devtools "1.0.0"]
[day8.re-frame/re-frame-10x "0.6.0"]
[day8.re-frame/tracing "0.5.3"]
[figwheel-sidecar "0.5.19"]
[cider/piggieback "0.4.2"]]
:resource-paths ^:replace ["config/dev" "config/defaults" "resources"]
:plugins [[lein-figwheel "0.5.19"]
[lein-doo "0.1.8"]]
:env {:development true}}
:kaocha {:dependencies [[lambdaisland/kaocha "1.0.700"]
[lambdaisland/kaocha-cljs "0.0-71"]]}
:repl {:source-paths ["dev"]}
:prod {:resource-paths ^:replace ["config/prod" "config/defaults" "resources"]}
:uberjar {:resource-paths ^:replace ["config/defaults" "resources"]
:prep-tasks ["build" "compile"]
:aot :all}
:java9 {:jvm-opts ["--add-modules" "java.xml.bind"]}
:biotestmine {;; We'd prefer to have resource path config/defaults here, but for some reason that makes the envvars below not apply.
:env {:bluegenes-default-service-root "http://localhost:9999/biotestmine"
:bluegenes-default-mine-name "Biotestmine"
:bluegenes-default-namespace "biotestmine"
:bluegenes-additional-mines [{:root "https://www.flymine.org/flymine" :name "FlyMine" :namespace "flymine"}]}}}
:cljsbuild {:builds {:dev {:source-paths ["src/cljs"]
:figwheel {:on-jsload "bluegenes.core/mount-root"}
:compiler {:main bluegenes.core
:optimizations :none
:output-to "resources/public/js/compiled/app.js"
:output-dir "resources/public/js/compiled"
:asset-path ~(str deploy-path "/js/compiled")
:source-map-timestamp true
:pretty-print true
;:parallel-build true
:closure-defines {"re_frame.trace.trace_enabled_QMARK_" true
"day8.re_frame.tracing.trace_enabled_QMARK_" true}
:preloads [devtools.preload
day8.re-frame-10x.preload]
:external-config {:devtools/config {:features-to-install :all}}}}
:min {:source-paths ["src/cljs"]
:jar true
:compiler {:main bluegenes.core
:output-to "resources/public/js/compiled/app.js"
:fingerprint true
:optimizations :advanced
:closure-defines {goog.DEBUG false
"bluegenes.version.release" ~version}
:pretty-print false}}}}
:main bluegenes.core
:uberjar-name "bluegenes.jar"
:repositories [
["clojars"
{:url "https://clojars.org/repo"}]]
;; How often should this repository be checked for
;; snapshot updates? (:daily, :always, or :never)
;:update :always
:release-tasks [["change" "version" "leiningen.release/bump-version"]
["change" "version" "leiningen.release/bump-version" "release"]
["vcs" "commit"]
["vcs" "tag" "--no-sign"]
["vcs" "push"]])