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why genotype1 have tumor cells? #172

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BioAmelie opened this issue Mar 3, 2024 · 1 comment

BioAmelie commented Mar 3, 2024

@teng-gao
Hi,
You mentioned that clone1 is normal cells (https://kharchenkolab.github.io/numbat/articles/results.html).
Why did I get two tumor cells? Is it because the p_CNV for these two cells is greater than 0.5?

Collaborator

teng-gao commented Mar 7, 2024

Are most cells in clone 1 assigned to the normal compartment? Any chance you can attach the clone_post dataframe?

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