Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error: lib/Bio/DB/BigFile.c: loadable library and perl binaries are mismatched (got handshake key 0xed00080, needed 0xeb00080) #90

Open
sahwa opened this issue Jan 27, 2023 · 0 comments

Comments

@sahwa
Copy link

sahwa commented Jan 27, 2023

loftee was working fine using VEP-103. However, when I run it now using the updated VEP-107, I get the error:

lib/Bio/DB/BigFile.c: loadable library and perl binaries are mismatched (got handshake key 0xed00080, needed 0xeb00080)

I am loading the different versions of VEP using the module system. VEP-103 was loaded using GCC 10, whereas VEP-107 was loaded with GCC 11. So I recompiled the kent source tree using GCC 11, reinstalled Bio::DB::BigFile etc etc and the same error persists. Any idea what might be causing it?

I am running the command:

vep \
        --input_file ${input_vcf} \
        --dir_cache /well/ckb/users/aey472/data \
        --assembly GRCh38 \
        -o ../output/imputed_v2.0_b38_chr${SGE_TASK_ID}_annot.cadd.loftee.0Kb.txt \
        --force_overwrite \
        --offline \
        --distance 0 \
        --canonical \
        --everything \
        --plugin LoF,loftee_path:${loftee},human_ancestor_fa:/well/ckb/users/aey472/projects/vep_annotation/data/human_ancestor.fa \
        --cache \
        --verbose
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant