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DESCRIPTION
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DESCRIPTION
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Package: HaplotypeMiner
Type: Package
Title: Gene-centered haplotyping from SNP data
Version: 0.1.0
Date: 2018-07-25
Authors@R: c(
person("Aurélie", "Tardivel", , "aurelie.tardivel.1@ulaval.ca", "aut"),
person("Davoud", "Torkamaneh", , "davoud.torkamaneh@gmail.com", "aut"),
person("Marc-André", "Lemay", , "marc-andre.lemay.2@ulaval.ca", c("aut", "cre")),
person("François", "Belzile", , "francois.belzile@fsaa.ulaval.ca", "aut"),
person("Louise", "O'Donoughue", , "louise.odonoughue@cerom.qc.ca", "aut")
)
Imports: BiocGenerics,
GenomeInfoDb,
ggplot2,
LDcorSV,
Matrix,
methods,
reshape2,
snpStats,
stringr,
SummarizedExperiment,
VariantAnnotation
Depends: R(>= 3.5.0)
Maintainer: Marc-André Lemay <marc-andre.lemay.2@ulaval.ca>
Description: This package allows the selection of polymorphic markers useful in defining
haplotypes of genes from SNP data. Included are functions used to parse genotypic
data (VCF and hapmap files), basic tools for filtering SNP data, as well as high-level
data visualization tools.
License: GPL-3 | file LICENSE
LazyData: TRUE
RoxygenNote: 6.0.1
Suggests: knitr,
rmarkdown
VignetteBuilder: knitr
Encoding: UTF-8
URL: http://github.com/malemay/HaplotypeMiner
BugReports: http://github.com/malemay/HaplotypeMiner/issues