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List_variables.m
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List_variables.m
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%% List of the main variables
%
%% Version
% 2.11
%
%% Contact
% Please report problems/bugs to michael.holmboe@umu.se
%
%% Main types of variables used in the atom MATLAB library
% # <Atom_label_variable.html Atom_label> % 1xn cell array
% # <atom_variable.html atom> % The main matlab struct variable
% # <Box_dim_variable.html Box_dim> % A 1x3 or 1x9 array variable holding the Box size parameters
% # <Cell_variable.html Cell> % A 1x6 array variable containing the a, b, c cell values and the alfa, beta, gamma angle values as used in a typical .pdb file
% # <distance_factor_variable.html distance_factor> % variable related to finding the nearest neighbours or bonds based on different atomtypes vdw radii.
% # <limits_variable.html limits> % A 1x6 array defining a volumetric region
% # <rmaxshort_variable.html rmaxshort> % Maximum H-related bond radius
% # <rmaxslong_variable.html rmaxlong> % Maximum non-H-related bond/neighbor radius
% # <XYZ_data_variable.html XYZ_data> % A nx3 matrix holdnig the XYZ-coordinates
% # <XYZ_labels_variable.html XYZ_labels> % A cell list om atom types