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Dockerfile
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FROM ubuntu:20.04
LABEL maintainer=c.sachs@fz-juelich.de
ARG DEBIAN_FRONTEND="noninteractive"
ARG MICROMAMBA="https://anaconda.org/conda-forge/micromamba/0.8.2/download/linux-64/micromamba-0.8.2-1.tar.bz2"
ARG PYTHONVERSION=3.9
ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 TZ=UTC
ENV PATH=/opt/conda/bin:${PATH}
ENV LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
ENV PYTHONDONTWRITEBYTECODE=1
ENV CONDA_PREFIX=/opt/conda
ENV MAMBA_ROOT_PREFIX=${CONDA_PREFIX}
COPY . /tmp/package
WORKDIR /tmp/package
RUN BUILD_START=`date +%s%N` && \
apt-get update && \
apt-get install -y --no-install-recommends libgl1-mesa-glx ca-certificates wget && \
rm -rf /var/lib/apt/lists/* && \
WORKDIR=`pwd` && mkdir -p /opt/conda/bin && cd /opt/conda/bin && \
wget -qO- $MICROMAMBA | tar xj bin/micromamba --strip-components=1 && unset MICROMAMBA && \
micromamba install -p $MAMBA_ROOT_PREFIX \
python=$PYTHONVERSION conda conda-build conda-verify boa \
-c conda-forge && \
echo "channels:\n- conda-forge\n- modsim\n" > ~/.condarc && \
cd $WORKDIR && \
conda mambabuild recipe && \
mamba install -y -c local cellsium && \
mkdir /opt/conda/packages && \
find /opt/conda/conda-bld -name '*.tar.bz2' -exec cp {} /opt/conda/packages \; && \
conda clean -afy || true && \
conda build purge-all && \
pip cache purge || true && \
apt-get purge --autoremove -y wget && \
useradd -m user && \
mkdir /data && \
chown -R user:user /data && \
BUILD_FINISH=`date +%s%N` && \
echo "Build done, took `perl -e "print(($BUILD_FINISH-$BUILD_START)/1000000000)"` seconds."
USER user
WORKDIR /data
ENTRYPOINT ["python", "-m", "cellsium"]