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DESCRIPTION
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DESCRIPTION
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Package: epireview
Title: Tools to update and summarise the latest pathogen data from the Pathogen Epidemiology Review Group (PERG)
Version: 1.2.0
Authors@R: c(
person("Rebecca", "Nash", email = "r.nash@imperial.ac.uk", role = "aut",
comment = c(ORCID = "0000-0002-5213-4364")),
person("Christian", "Morgenstern", email = "c.morgenstern@imperial.ac.uk", role = "aut",
comment = c(ORCID = "0000-0003-3735-1130")),
person("Cosmo", "Santoni", email = "cosmo.santoni@imperial.ac.uk", role = "aut"),
person("Sangeeta", "Bhatia", email = "s.bhatia@imperial.ac.uk", role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-6525-101X")),
person("Richard", "Sheppard", email = "richard.sheppard11@imperial.ac.uk", role = "aut"),
person("Joseph", "Hicks", email = "j.hicks@imperial.ac.uk", role = "aut"),
person("Gina", "Cuomo-Dannenburg", role = "aut", comment = c(ORCID = "0000-0001-6821-0352")),
person("Ruth", "McCabe", role = "aut", comment = c(ORCID = "0000-0002-6368-9103")),
person("Kelly", "McCain", role = "aut", comment = c(ORCID = "0000-0003-2393-2217")),
person("Anne", "Cori", role = "aut", comment = c(ORCID = "0000-0002-8443-9162")))
Description: Contains the latest open access pathogen data from the Pathogen Epidemiology Review Group (PERG). Tools are available to update pathogen databases with new peer-reviewed data as it becomes available, and to summarise the latest data using tables and figures.
License: GPL (>= 3)
Depends:
epitrix,
ggplot2,
ggforce,
R (>= 3.3.0)
Imports:
tibble,
dplyr,
tidyr,
readr,
patchwork,
flextable,
tm,
officer,
stringr,
validate,
pals,
paletteer,
methods,
scales
Suggests:
knitr,
lifecycle,
tidyverse,
testthat (>= 3.0.0),
rmarkdown
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://mrc-ide.github.io/epireview/
LazyData: true
BugReports: https://github.com/mrc-ide/epireview/issues