mpox-outputs OrderlyWeb configuration

Prerequisites

First, install the deploy tool

pip3 install --user orderly-web

Ensure that the path that the script is copied into is in your path (on Linux, most likely ~/.local/bin, on OSX ~/Library/Python/<version>/bin

Start

orderly-web start config

Upgrading

It is possible that the orderly-web deploy scripts should be updated

pip3 install --user --upgrade orderly-web

Then redeploy with:

orderly-web stop config
orderly-web start --pull config

Set up a deploy key

ssh-keygen -t rsa -b 4096 -C "r.fitzjohn@imperial.ac.uk" -f deploy_key
vault login -method=github
vault write secret/mpox/deploy-key public=@deploy_key.pub private=@deploy_key
xsel --clipboard < deploy_key.pub

Add the key here: https://github.com/mrc-ide/mpxv-who-outputs/settings/keys/new