Skip to content

Latest commit

 

History

History
102 lines (60 loc) · 2.34 KB

index.rst

File metadata and controls

102 lines (60 loc) · 2.34 KB
Raw

Quantitative Imaging Profile

Synopsis

The Quantitative Imaging Profile (QIPr) web application displays medical imaging and clinical data. The intent is to visualize the correlation of imaging analysis biomarkers with clinical outcomes.

Feature List

  1. Side-by-side clinical and pharmacokinetic modeling results display.
  2. MR visualization.
  3. ROI and modeling overlays.

Installation

  1. Install a REST server, if necessary.

  2. Install Git, if necessary.

  3. Make a directory to hold your git repository, if necessary, e.g.:

    mkdir -p ~/workspaces
cd ~/workspaces

  1. Clone the qiprofile GitHub repository, e.g.:

    git clone https://github.com/ohsu-qin/qiprofile
cd qiprofile

  1. Download npm.

  2. Run the following in a console from the repository directory (omit the --production flag for a development installation):

    npm install --production

See the Developer Guide for installing a development project.

Usage

  1. Populate the qiprofile database. A test database is available in the REST project, as described in the REST Development section. The production database is populated by the qipipe pipeline.

  2. Start the REST server, as described in the REST Usage section.

  3. Run the following command to start the web application server:

    ./bin/qiprofile

  4. Once you have a database, e.g. the Developer Guide demo seed database, then the landing page is host:3000/qiprofile, where host is the web application host URL.

See the Developer Guide for starting a development server.

.. toctree::
  :hidden:

  development