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Dockerfile
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Dockerfile
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FROM nvcr.io/nvidia/pytorch:22.03-py3
ARG MYUSER=this_user
ARG MYUID=1000
ARG MYGID=1000
ENV DEBIAN_FRONTEND noninteractive
# Install cmake, add user
RUN mkdir -p /workspace && cd /workspace && \
if [ -f /usr/bin/yum ]; then yum install -y make wget vim libfftw3-dev scons python3-distutils man; fi && \
if [ -f /usr/bin/apt-get ]; then apt-get update && apt-get install -y apt-utils make man wget vim libfftw3-dev scons python3-distutils; fi && \
groupadd -f -g ${MYGID} ${MYUSER} && \
useradd -rm -u $MYUID -g $MYUSER -p "" $MYUSER && \
chown ${MYUSER}:${MYGID} /workspace
USER $MYUSER
RUN pip install natsort ipynb segyio scikit-image latex seaborn ipywidgets
RUN echo "#!/bin/bash" >> /workspace/install_denise.sh && \
echo "cd /workspace/project/" >> /workspace/install_denise.sh && \
echo "wget https://github.com/daniel-koehn/DENISE-Black-Edition/archive/master.zip -O DENISE-Black-Edition.zip" >> /workspace/install_denise.sh && \
echo "unzip DENISE-Black-Edition.zip && rm DENISE-Black-Edition.zip" >> /workspace/install_denise.sh && \
echo "cd /workspace/project/DENISE-Black-Edition-master/libcseife" >> /workspace/install_denise.sh && \
echo "make" >> /workspace/install_denise.sh && \
echo "cd /workspace/project/DENISE-Black-Edition-master/src" >> /workspace/install_denise.sh && \
echo "make -j 4 denise" >> /workspace/install_denise.sh && \
chmod 755 /workspace/install_denise.sh
RUN echo "#!/bin/bash" >> /workspace/install_madagascar.sh && \
echo "cd /workspace/project/" >> /workspace/install_madagascar.sh && \
echo "git clone https://github.com/ahay/src RSFSRC" >> /workspace/install_madagascar.sh && \
echo "cd /workspace/project/RSFSRC" >> /workspace/install_madagascar.sh && \
echo "./configure --prefix=/workspace/project/madagascar" >> /workspace/install_madagascar.sh && \
echo "make -j 4 install" >> /workspace/install_madagascar.sh && \
echo "cd /workspace/project/" >> /workspace/install_madagascar.sh && \
echo "source /workspace/project/madagascar/share/madagascar/etc/env.sh" >> /workspace/install_madagascar.sh && \
chmod 755 /workspace/install_madagascar.sh
RUN echo "#!/bin/bash" >> /workspace/download_data.sh && \
echo "cd /workspace/project/" >> /workspace/download_data.sh && \
echo "wget https://www.dropbox.com/s/58zckalcm6wlp06/data.tar.gz?dl=1 -O /workspace/project/pretrained_files/data.tar.gz" >> /workspace/download_data.sh && \
echo "tar -xvf /workspace/project/pretrained_files/data.tar.gz -C /workspace/project/pretrained_files/ && rm /workspace/project/pretrained_files/data.tar.gz" >> /workspace/download_data.sh && \
echo "wget https://www.dropbox.com/s/a8wvncp86iiob0d/trained_nets.tar.gz?dl=1 -O /workspace/project/pretrained_files/trained_nets.tar.gz" >> /workspace/download_data.sh && \
echo "tar -xvf /workspace/project/pretrained_files/trained_nets.tar.gz -C /workspace/project/pretrained_files/ && rm /workspace/project/pretrained_files/trained_nets.tar.gz" >> /workspace/download_data.sh && \
echo "wget https://www.dropbox.com/s/jpnb18j62jqrs22/fwi_outputs.tar.gz?dl=1 -O /workspace/project/pretrained_files/fwi_outputs.tar.gz" >> /workspace/download_data.sh && \
echo "tar -xvf /workspace/project/pretrained_files/fwi_outputs.tar.gz -C /workspace/project/pretrained_files/ && rm /workspace/project/pretrained_files/fwi_outputs.tar.gz" >> /workspace/download_data.sh && \
chmod 755 /workspace/download_data.sh
# RUN echo "source /workspace/project/madagascar/share/madagascar/etc/env.sh" >> /${MYUSER}/.bashrc
WORKDIR /workspace/project