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T is not a recognized residue type for DNA #367

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GiovanniBussi opened this issue Jun 14, 2018 · 0 comments
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T is not a recognized residue type for DNA #367

GiovanniBussi opened this issue Jun 14, 2018 · 0 comments
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@GiovanniBussi
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Currently, we recognize in MOLINFO the following DNA residue types:

DX
DX5
DX3
DXN

with X = A, T, C, or G.
On the other hand, for RNA we recognize:

RX
RX5
RX3
RXN
X
X5
X3
XN

with X = A, T, C, or G.

As a consequence, if a residue is named T one cannot use special selections (it should be renamed as DT).

I think we never need to know if a residue is RNA or DNA type, since in order to find symbols we just check that allowedResidue("rna",resname) || allowedResidue("dna",resname).
Probably it would be harmless to add X, X5, X3, and XN to DNA as well.

@GiovanniBussi GiovanniBussi self-assigned this Jun 20, 2018
@GiovanniBussi GiovanniBussi added this to the Version 2.4 milestone Jun 20, 2018
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