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Plotting of g-test stats results gives wrong values #276

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clabornd opened this issue Jun 12, 2023 · 0 comments

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clabornd commented Jun 12, 2023

Will get a reprex up but:

apply imd_anova filter
remove a sample (with e.g. rmd filter)
apply imd_anova

The counts on the heatmap still take into account the biomolecules that were from invalid comparisons.

Javi has a simple fix where we simply filter out the NA p-values from invalid G-test comparisons.

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