/
canto_local.yaml
53 lines (41 loc) · 1.25 KB
/
canto_local.yaml
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long_name: PomBase community curation application
database_name: PomBase
database_url: 'http://www.pombase.org/'
Model::TrackModel:
schema_class: 'Canto::TrackDB'
connect_info:
- "dbi:SQLite:dbname=t/data/track_curs_annotations_2_test_template.sqlite3"
data_directory: "t/data"
Model::ChadoModel:
schema_class: 'Canto::ChadoDB'
connect_info:
- "dbi:SQLite:dbname=t/data/chado_test_db.sqlite3"
email:
from_address: noreply@curation.pombase.org
admin_address: kmr44@cam.ac.uk
instance_organism:
taxonid: 4896
instance_front_mhtml: /docs/pombase_instance_front.mhtml
instance_index_mhtml: /docs/pombase_index.mhtml
extra_css: /static/css/test_style.css
front_page_title: 'Welcome to Canto the PomBase community curation tool'
front_page_template: local/pombase_front.mhtml
default_local_page: pombase_front
extension_conf_files:
- t/data/extension_config.tsv
# restrict the list of annotation types
#enabled_annotation_type_list:
# - molecular_function
# - biological_process
# - cellular_component
implementation_classes:
ontology_annotation_adaptor: Canto::Chado::OntologyAnnotationLookup
annotation_types:
molecular_function:
evidence_codes:
- ISS
cache:
memcached:
servers:
- 127.0.0.1:11211
canto_offline: 0