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Error: operator is invalid for atomic vectors #169

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kgeyer opened this issue Mar 10, 2022 · 1 comment
Open

Error: operator is invalid for atomic vectors #169

kgeyer opened this issue Mar 10, 2022 · 1 comment

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@kgeyer
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kgeyer commented Mar 10, 2022

Hello, I'm using NMF v0.23.0 and have been getting an error concerning atomic vectors using the nmf function. The code and error message are printed below. Please let me know if you need more information to troubleshoot.

Code: Run NMF on a (samples x features) matrix object:
res = NMF::nmf(sbsX, rank = 2:max.rank, seed = 'nnsvd', method = 'brunet', nruns = nruns, .opt = paste0('vp', ncores), .options='t')

Error message:

Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Timing stopped at: 0 0 0
Error in (function (...) : All the runs produced an error:
-#1 [r=2] -> $ operator is invalid for atomic vectors
-#2 [r=3] -> $ operator is invalid for atomic vectors
-#3 [r=4] -> $ operator is invalid for atomic vectors
-#4 [r=5] -> $ operator is invalid for atomic vectors
-#5 [r=6] -> $ operator is invalid for atomic vectors
-#6 [r=7] -> $ operator is invalid for atomic vectors
-#7 [r=8] -> $ operator is invalid for atomic vectors
-#8 [r=9] -> $ operator is invalid for atomic vectors
-#9 [r=10] -> $ operator is invalid for atomic vectors
-#10 [r=11] -> $ operator is invalid for atomic vectors
-#11 [r=12] -> $ operator is invalid for atomic vectors
-#12 [r=13] -> $ operator is invalid for atomic vectors
-#13 [r=14] -> $ operator is invalid for atomic vectors
-#14 [r=15] -> $ operator is invalid for atomic vectors
-#15 [r=16] -> $ operator is invalid for atomic vectors
-#16 [r=17] -> $ operator is invalid for atomic vectors
-#17 [r=18] -> $ operator is invalid for atomic vectors

@Serine94209792
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Hello, have you solved this problem? I also have the same error

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