Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

glyphs representing bed_merge output contain overlapping intervals #175

Closed
jayhesselberth opened this issue Mar 1, 2017 · 0 comments · Fixed by #190
Closed

glyphs representing bed_merge output contain overlapping intervals #175

jayhesselberth opened this issue Mar 1, 2017 · 0 comments · Fixed by #190
Assignees
@jayhesselberth

Comments

@jayhesselberth
Copy link
Member

The changes introduced in #171 changed glyphs in bed_merge, bed_cluster and bed_makewindows (see changes in d9545f4). Looks like a problem in bed_glyph itself, but the interval order seems to have changed as well (merge output may need to be internally sorted).
@jayhesselberth jayhesselberth mentioned this issue Mar 9, 2017
Closed
jayhesselberth added a commit that referenced this issue Mar 11, 2017
@jayhesselberth
fix y-interval ordering in bed_glyph
ed922c5 
- add test for too many intervals
- re-pkgd
- closes #175, closes #189
@jayhesselberth jayhesselberth mentioned this issue Mar 11, 2017
Merged
@jayhesselberth jayhesselberth self-assigned this Mar 11, 2017
jayhesselberth added a commit that referenced this issue Mar 12, 2017
@jayhesselberth
fix y-interval ordering in bed_glyph (#190)
ca7e525 
- add test for too many intervals
- re-pkgd
- closes #175, closes #189
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@jayhesselberth jayhesselberth

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

fix y-interval ordering in bed_glyph rnabioco/valr
1 participant
@jayhesselberth