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@Rostlab

Rostlab

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  1. predictprotein-docker predictprotein-docker Public

    Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository will result in a fully functioning predictprotein suite, in…

    Dockerfile 11 7

  2. bio_embeddings bio_embeddings Public

    Repository containing bio_embeddings resources

  3. EAT EAT Public

    Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annotations from a set of labeled lookup protein embeddings to …

    Python 23 7

  4. VESPA VESPA Public

    VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5.

    Python 26 5

  5. TMbed TMbed Public

    Transmembrane proteins predicted through Language Model embeddings

  6. ProtTrans ProtTrans Public

    Forked from agemagician/ProtTrans

    ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

    Jupyter Notebook 7 1

Repositories

Showing 10 of 55 repositories
  • VESPA Public

    VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5.

    Python 26 AGPL-3.0 5 0 0 Updated Mar 4, 2024
  • TMvisDB Public

    TMvisDB provides per-residue transmembrane topology annotations for all proteins in AlphaFold DB (~ 200 million proteins, September '22) predicted as transmembrane proteins (~ 46 million).

    Python 0 AFL-3.0 0 0 0 Updated Jan 3, 2024
  • mlschool23 Public

    Website for the Machine Learning Summerschool for Toxinologists

    JavaScript 0 MIT 0 0 0 Updated Nov 23, 2023
  • smiles-cl Public
    Python 1 Apache-2.0 0 0 0 Updated Aug 15, 2023
  • blog Public
    TypeScript 0 MIT 0 0 0 Updated Aug 3, 2023
  • LambdaPP Public
    JavaScript 4 AFL-3.0 0 0 0 Updated May 12, 2023
  • goPredSim Public
    Python 42 MIT 4 0 0 Updated May 8, 2023
  • RostSpace Public
    Python 2 AGPL-3.0 1 2 0 Updated Mar 15, 2023
  • ppi_utils Public
    Python 0 AFL-3.0 0 0 0 Updated Mar 14, 2023
  • predictprotein-docker Public

    Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository will result in a fully functioning predictprotein suite, including all of its required methods. Databases are not included.

    Dockerfile 11 7 1 0 Updated Feb 13, 2023
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