NAMESPACE

import( methods )
importFrom( stats, fisher.test )
importFrom( RColorBrewer, brewer.pal )
importFrom( gplots, heatmap.2 )

exportClasses( "GeneOverlap", "GeneOverlapMatrix" )

exportMethods(
    show, print,
    getListA, "setListA<-",
    getListB, "setListB<-",
    getIntersection,
    getUnion,
    getGenomeSize, "setGenomeSize<-",
    getTested,
    getContbl,
    getPval,
    getOddsRatio,
    getJaccard,
    testGeneOverlap,
    getGsetA,
    getGsetB,
    getSelfCompare,
    getMatrix,
    getNestedList,
    "[",
    drawHeatmap
)

export(
    newGeneOverlap,
    newGOM
)

# exportPattern("^[[:alpha:]]+")