Genes to Cognition: Hippocampus vs Cortex project. This package provides code relating to our Neural Development article. There is a companion package, g2chvcdata, that stores our data.
You will first need to install the data package g2chvcdata and the sjemea packages.
To install this package in R you need the devtools package; skip the first line if you already have it installed:
install.packages("devtools")
devtools::install_github("sje30/g2chvc", quick=TRUE)
Setting quick=TRUE prevents the vignettes from being rebuilt (which
can take a long time right now.)
The scripts for generating figures are stored in inst/makefigs/
which you can directly run, e.g.:
require(g2chvc)
source(system.file("makefigs/hvc_rasters.R", package="g2chvc"))
In this case you will see PDFs made in your current working directory. There is one script for each figure in the paper.
knitr::knit2pdf(system.file("makefigs", "hvc_class.Rnw", package="g2chvc"))
Or from the command line you can do something like:
MC_CORES=8 Rscript -e 'knitr::knit2pdf(system.file("makefigs", "hvc_class.Rnw", package="g2chvc"))'
This will generate a vignette and leave a copy of the .tex file in the
/tmp directory and the generated vignette hvc_class.pdf in your
working directory.