/
Makefile
446 lines (367 loc) · 14.4 KB
/
Makefile
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#!make -f
#
# @(#)Makefile 2.16 John Ashburner 03/05/12
# Note that changes have been made outside SCCS
# $Id$
#
###############################################################################
#
# Suggestions for how to make this file a bit more elegant are welcome. So far
# it works under SunOS and Linux (at the FIL) and some Windows systems
#
# $Log$
#
###############################################################################
###############################################################################
# Default make
###############################################################################
unknown:
@ make `uname`
tidy:
@ make clean.`uname`
###############################################################################
# Architecture specific makes
###############################################################################
MEX = mex -O
CC = cc
# mex output object suffix
MOSUF = o
CHMODIT = chmod 644
RANLIB =
ADDED_OBS=
ADDED_MEX=
SunOS:
make all SUF=mexsol CC="cc -xO5" MEX="mex COPTIMFLAGS=-xO5"
Linux:
make all SUF=mexglx CC="gcc -O3 -funroll-loops" MEX="mex COPTIMFLAGS='-O3 -funroll-loops'"
Linux.5:
make all SUF=mexlx CC="gcc -O3 -funroll-loops" MEX="mex COPTIMFLAGS='-O3 -funroll-loops'"
HP-UX:
make all SUF=mexhp7 CC="cc -O +z -Ae +DAportable" MEX="mex COPTIMFLAGS=-O"
IRIX:
make all SUF=mexsg CC="cc -O -mips2" MEX="mex"
IRIX64:
make all SUF=mexsg64 CC="cc -O -mips4 -64" MEX="mex"
AIX:
make all SUF=mexrs6
OSF1:
make all SUF=mexaxp
MAC:
make all SUF=mexmac RANLIB="ranlib spm_vol_utils.mexmac.a"
MACI:
make all SUF=mexmaci RANLIB="ranlib spm_vol_utils.mexmaci.a"
MACI64:
make all SUF=mexmaci64 RANLIB="ranlib spm_vol_utils.mexmaci64.a"
Linux.A64:
# The '-fPIC' option is nexessary to allow the linking proces to complete.
# '-march=x86-64' provides generic optimisations for both Opteron and 64bit Xeon.
# If the code is running on a 64bit Xeon you can change '-march=x86-64' to
# '-march=nocona', when running on an Opteron, change it to '-march=opteron'.
# Also possibly use '-march=k8' for 64 bit Athlon.
make all SUF=mexa64 CC="gcc -O3 -funroll-loops -fPIC -march=x86-64 -mfpmath=sse"\
MEX="mex COPTIMFLAGS='-O3 -funroll-loops -fPIC -march=x86-64 -mfpmath=sse'"
#windows:
# make all SUF=dll MOSUF=obj CHMODIT="echo > null" ADDED_OBS=win32mmap.dll.o ADDED_MEX=spm_win32utils.dll
windows:
# Consider adding either of the following, depending on your platform:
# -march=pentium3
# -march=pentium4
make all SUF=dll CC="gcc -mno-cygwin -O3 -funroll-loops -fomit-frame-pointer -march=pentium4 -mfpmath=sse -DSPM_WIN32" MEX="mex.bat -DSPM_WIN32" MOSUF=obj CHMODIT="echo > NUL" ADDED_OBS=win32mmap.dll.o ADDED_MEX=spm_win32utils.dll
###############################################################################
# Architecture specific cleaning
###############################################################################
clean.SunOS:
make clean SUF=mexsol
clean.Linux:
make clean SUF=mexglx
clean.Linux.5:
make clean SUF=mexlx
clean.Linux.A64:
make clean SUF=mexa64
clean.HP-UX:
make clean SUF=mexhp7
clean.IRIX:
make clean SUF=mexsg
clean.IRIX64:
make clean SUF=mexsg64
clean.AIX:
make clean SUF=mexrs6
clean.OSF1:
make clean SUF=mexaxp
clean.MAC:
make clean SUF=mexmac
clean.MACI:
make clean SUF=mexmaci
clean.MACI64:
make clean SUF=mexmaci64
clean.windows:
make clean SUF=dll
###############################################################################
# Objects to go in the archive and mexfiles
###############################################################################
SUF = unknown
OBS = utils_uchar.$(SUF).o utils_short.$(SUF).o utils_int.$(SUF).o \
utils_schar.$(SUF).o utils_ushort.$(SUF).o utils_uint.$(SUF).o\
utils_float.$(SUF).o utils_double.$(SUF).o\
utils_short_s.$(SUF).o utils_int_s.$(SUF).o\
utils_ushort_s.$(SUF).o utils_uint_s.$(SUF).o\
utils_float_s.$(SUF).o utils_double_s.$(SUF).o\
spm_make_lookup.$(SUF).o spm_getdata.$(SUF).o spm_vol_access.$(SUF).o\
spm_mapping.$(SUF).o $(ADDED_OBS)
SPMMEX =\
spm_sample_vol.$(SUF) spm_slice_vol.$(SUF) spm_brainwarp.$(SUF)\
spm_add.$(SUF) spm_conv_vol.$(SUF) spm_render_vol.$(SUF)\
spm_global.$(SUF) spm_resels_vol.$(SUF)\
spm_atranspa.$(SUF) spm_list_files.$(SUF) spm_unlink.$(SUF)\
spm_krutil.$(SUF) spm_project.$(SUF) spm_hist2.$(SUF) spm_max.$(SUF)\
spm_clusters.$(SUF) spm_bsplinc.$(SUF) spm_bsplins.$(SUF)\
spm_bias_mex.$(SUF) spm_dilate.$(SUF) $(ADDED_MEX)
###############################################################################
# The main ways to run make
###############################################################################
all: verb.$(SUF) $(SPMMEX)
@ echo "_____________________________________________________________"
@ echo ""
@ echo " FINISHED"
@ echo "_____________________________________________________________"
@ echo ""
very_clean: clean
@ echo "_____________________________________________________________"
@ echo ""
@ echo " Deleting mex and archive (.a) files"
@ echo "_____________________________________________________________"
@ echo ""
rm -f $(SPMMEX) spm_vol_utils.$(SUF).a
clean:
@ echo "_____________________________________________________________"
@ echo ""
@ echo " Deleting object (.o) files"
@ echo "_____________________________________________________________"
@ echo ""
rm -f $(OBS)
archive: spm_vol_utils.$(SUF).a
###############################################################################
# Compile spm_vol_utils.c with various flags
###############################################################################
spm_vol_utils.$(SUF).a: $(OBS)
rm -f $@
ar rcv $@ $(OBS)
$(RANLIB)
@ $(CHMODIT) $@
UTILS=spm_vol_utils.c spm_sys_deps.h spm_make_lookup.h spm_getdata.h
utils_uchar.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_UNSIGNED_CHAR
@ $(CHMODIT) $@
utils_short.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_SIGNED_SHORT
@ $(CHMODIT) $@
utils_int.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_SIGNED_INT
@ $(CHMODIT) $@
utils_schar.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_SIGNED_CHAR
@ $(CHMODIT) $@
utils_ushort.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_UNSIGNED_SHORT
@ $(CHMODIT) $@
utils_uint.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_UNSIGNED_INT
@ $(CHMODIT) $@
utils_float.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_FLOAT
@ $(CHMODIT) $@
utils_double.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_DOUBLE
@ $(CHMODIT) $@
utils_short_s.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_SIGNED_SHORT -DSPM_BYTESWAP
@ $(CHMODIT) $@
utils_int_s.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_SIGNED_INT -DSPM_BYTESWAP
@ $(CHMODIT) $@
utils_ushort_s.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_UNSIGNED_SHORT -DSPM_BYTESWAP
@ $(CHMODIT) $@
utils_uint_s.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_UNSIGNED_INT -DSPM_BYTESWAP
@ $(CHMODIT) $@
utils_float_s.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_FLOAT -DSPM_BYTESWAP
@ $(CHMODIT) $@
utils_double_s.$(SUF).o: $(UTILS)
$(CC) -c -o $@ spm_vol_utils.c -DSPM_DOUBLE -DSPM_BYTESWAP
@ $(CHMODIT) $@
###############################################################################
# Compile a few additional C routines for linking
###############################################################################
%.$(SUF).o : %.c spm_sys_deps.h
$(CC) -c -o $@ $<
@ $(CHMODIT) $@
spm_getdata.$(SUF).o: spm_getdata.c spm_sys_deps.h
spm_vol_access.$(SUF).o: spm_vol_access.c spm_vol_access.h spm_datatypes.h
spm_make_lookup.$(SUF).o: spm_make_lookup.c spm_sys_deps.h
spm_getdata.$(SUF).o: spm_getdata.c
spm_mapping.$(SUF).o: spm_mapping.c spm_sys_deps.h spm_mapping.h spm_datatypes.h
$(MEX) -c spm_mapping.c
mv spm_mapping.$(MOSUF) $@
@ $(CHMODIT) $@
win32mmap.$(SUF).o: win32mmap.c win32mmap.h
$(CC) -c -o $@ win32mmap.c
@ $(CHMODIT) $@
###############################################################################
# Compile the mex files themselves
###############################################################################
%.$(SUF) : %.c spm_sys_deps.h
$(MEX) $<
@ $(CHMODIT) $@
spm_add.$(SUF): spm_add.c spm_vol_utils.$(SUF).a\
spm_sys_deps.h spm_mapping.h
$(MEX) spm_add.c spm_vol_utils.$(SUF).a
@ $(CHMODIT) $@
spm_brainwarp.$(SUF): spm_brainwarp.c spm_vol_utils.$(SUF).a spm_matfuns.c\
spm_sys_deps.h spm_mapping.h
$(MEX) spm_brainwarp.c spm_vol_utils.$(SUF).a spm_matfuns.c
@ $(CHMODIT) $@
spm_bsplinc.$(SUF): spm_bsplinc.c spm_vol_utils.$(SUF).a\
spm_sys_deps.h spm_mapping.h spm_datatypes.h
$(MEX) spm_bsplinc.c spm_vol_utils.$(SUF).a
@ $(CHMODIT) $@
spm_bsplins.$(SUF): spm_bsplins.c spm_sys_deps.h
$(MEX) spm_bsplins.c
@ $(CHMODIT) $@
spm_conv_vol.$(SUF): spm_conv_vol.c spm_vol_utils.$(SUF).a\
spm_sys_deps.h spm_mapping.h spm_datatypes.h
$(MEX) spm_conv_vol.c spm_vol_utils.$(SUF).a
@ $(CHMODIT) $@
spm_global.$(SUF): spm_global.c spm_vol_utils.$(SUF).a\
spm_sys_deps.h spm_mapping.h
$(MEX) spm_global.c spm_vol_utils.$(SUF).a
@ $(CHMODIT) $@
spm_atranspa.$(SUF): spm_atranspa.c spm_sys_deps.h
spm_unlink.$(SUF): spm_unlink.c spm_sys_deps.h
spm_max.$(SUF): spm_max.c spm_sys_deps.h
spm_clusters.$(SUF): spm_clusters.c spm_sys_deps.h
spm_hist2.$(SUF): spm_hist2.c spm_sys_deps.h
spm_krutil.$(SUF): spm_krutil.c spm_sys_deps.h
spm_dilate.$(SUF): spm_dilate.c
spm_list_files.$(SUF): spm_list_files.c spm_sys_deps.h
spm_project.$(SUF): spm_project.c spm_sys_deps.h
spm_render_vol.$(SUF): spm_render_vol.c spm_vol_utils.$(SUF).a\
spm_sys_deps.h spm_mapping.h
$(MEX) spm_render_vol.c spm_vol_utils.$(SUF).a
@ $(CHMODIT) $@
spm_resels_vol.$(SUF): spm_resels_vol.c spm_vol_utils.$(SUF).a\
spm_sys_deps.h spm_mapping.h
$(MEX) spm_resels_vol.c spm_vol_utils.$(SUF).a
@ $(CHMODIT) $@
spm_sample_vol.$(SUF): spm_sample_vol.c spm_vol_utils.$(SUF).a spm_mapping.h
$(MEX) spm_sample_vol.c spm_vol_utils.$(SUF).a
@ $(CHMODIT) $@
spm_slice_vol.$(SUF): spm_slice_vol.c spm_vol_utils.$(SUF).a spm_mapping.h
$(MEX) spm_slice_vol.c spm_vol_utils.$(SUF).a
@ $(CHMODIT) $@
spm_bias_mex.$(SUF): spm_bias_mex.c spm_vol_utils.$(SUF).a spm_mapping.h
$(MEX) spm_bias_mex.c spm_vol_utils.$(SUF).a
@ $(CHMODIT) $@
spm_win32utils.$(SUF): spm_win32utils.c
$(MEX) spm_win32utils.c
@ $(CHMODIT) $@
###############################################################################
# Assorted architecture dependent messages
###############################################################################
verb.unknown:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "PROBLEM: Dont know how to do this."
@ echo "_____________________________________________________________"
@ echo ""
verb.mexhp7:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "unix compile for hpux cc, and maybe aix cc"
@ echo ""
@ echo "Under HPUX 10.20 with MATLAB 5.2.1 and gcc, you may wish"
@ echo "to modify this Makefile to say something like:"
@ echo ' CC=gcc -O -fpic'
@ echo ' MEX=mex COPTIMFLAGS=-O -f gccopts.sh'
@ echo "where the gccopts.sh file is modified to remove the +z"
@ echo "(which is used with version 9.0 and possibly also 10.0)."
@ echo "_____________________________________________________________"
@ echo ""
verb.mexsg:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "Feedback from users with R10000 O2 and R10000 Indigo2 systems"
@ echo "running IRIX6.5 suggests that the cmex program with Matlab 5.x"
@ echo "compiles with the old 32bit (o32) instruction set (MIPS2) only,"
@ echo "while cc by default compiles with the new32 bit (n32 or MIPS4)."
@ echo "Matlab 5.x only likes o32 for O2 R10000 systems."
@ echo ""
@ echo "We also suggest you modify your options file mexopts.sh in"
@ echo 'the sgi section: change LD="ld" to LD="ld -o32"'
@ echo "this tells the linker to use o32 instead of n32."
@ echo "_____________________________________________________________"
@ echo ""
verb.mexsg64:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "not optimised sgi 64 bit compile for CC"
@ echo "_____________________________________________________________"
@ echo ""
verb.dll:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "Windows compile with gcc/mingw"
@ echo "see http://www.mrc-cbu.cam.ac.uk/Imaging/gnumex20.html"
@ echo "for instructions about installing gcc/mingw for"
@ echo "compiling Mex files."
@ echo "_____________________________________________________________"
@ echo ""
verb.mexsol:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "Unix compile for Sun cc"
@ echo "_____________________________________________________________"
@ echo ""
verb.mexlx:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "Linux compilation (Matlab 5.x) - using gcc"
@ echo "_____________________________________________________________"
@ echo ""
verb.mexglx:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "Linux compilation (Matlab 6.x) - using gcc"
@ echo "_____________________________________________________________"
@ echo ""
verb.mexaxp:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "keep your fingers crossed"
@ echo "_____________________________________________________________"
@ echo ""
verb.mexmac:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "Unix compile for MacOS X"
@ echo "_____________________________________________________________"
@ echo ""
verb.mexmaci:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "Unix compile for MacOS X, Intel 32 bit"
@ echo "_____________________________________________________________"
@ echo ""
verb.mexmaci64:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "Unix compile for MacOS X, Intel 64 bit"
@ echo "_____________________________________________________________"
@ echo ""
verb.mexa64:
@ echo "_____________________________________________________________"
@ echo ""
@ echo "Unix compile for Linux A64"
@ echo "_____________________________________________________________"
@ echo ""