SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.
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Updated
May 28, 2024 - Java
SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.
An R package and web application for estimating the basic reproduction number (R0) of infectious diseases.
Tracking reported MPX cases in North Carolina
Infectious Disease Sequencing Platform
Mycobacterial pipeline
PhyloTrace is a GUI platform for a fully controllable cgMLST analysis workflow.
Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance
Mathematical Modeling of Infectious Disease Dynamics
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Create Contact Matrices from Population Data
risk modelling for virbrio infections and estimating the attributable rates
odd ratios estimator and likelihood of occurrence in geographical location
This package provides the data used in the Health Metrics and the Spread of Infectious Diseases with R book
R Package for individual based epidemiological models
A tool to circularize genome assemblies
CRAN Task View: Epidemiology
NACef (Community-Acquired Pneumonia, Endotypes and Phenotypes) is a single-center dataset that includes clinical information from 768 patients diagnosed with Community-Acquired Pneumonia (CAP) at Clinica Universidad de La Sabana, Colombia.
Exam project of Data Technology and Machine Learning course @unimib18/19.
CIDO: Coronavirus Infectious Disease Ontology
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