(Archived) My M.Sc. Bioinformatics project, using Bayes classification with search engine tricks, to expand a list of Medline IDs (e.g. a citation list) with more relevant articles.
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Updated
Mar 19, 2024 - Python
(Archived) My M.Sc. Bioinformatics project, using Bayes classification with search engine tricks, to expand a list of Medline IDs (e.g. a citation list) with more relevant articles.
Search Workbench is a tool for visually appraising, editing and comparing PubMed searches
The Corpus Storage System (CoStoSys) is a tool and abstraction layer for a PostgreSQL document database and part of the Jena Document Information System (JeDIS).
MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
Chart the proportion of MeSH subheading in a given PubMed results set
Chart the proportion of MeSH categories is a given PubMed results set
Data Mining and Analysis Approach to Understand Covid-19 through PubMed Bibliographic and other MEDLINE metadata.
Query analysis pipeline framework
DSL front-end for groove query analysis pipeline
A simple console application that will go through the Medline Pubmed dataset and extract out a given set of fields.
Small webservice to grab by-year counts for a PubMed search
Tabular representation of author-to-author relationships in the Medline dataset
Computing term cooccurrence in MEDLINE
Python scripts for searching Pubmed using Biopython and working with eponymous terms
Use the MTI tooling from NCBI to map UMLS and MESH terms to arbitrary text.
Add a description, image, and links to the medline topic page so that developers can more easily learn about it.
To associate your repository with the medline topic, visit your repo's landing page and select "manage topics."