A somatic mutation signature simulator
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Updated
Feb 13, 2020 - Python
A somatic mutation signature simulator
Mutational Signatue Analysis using R
Code used to plot mutational signature profiles in https://doi.org/10.1101/322859. Please use the supported R package ICAMS instead.
deconstructSigs for Clojure
Some workflows I wrote for my phd projects
📦 My personal python utility library.
This plot is useful for the comparison of mutational load across the cancer types, with input data in 2 coulmns i.e cancer types and mutatonal load for each samples in specificed cancer type.
Pre-compiled absolute CNV data, which can be used for package sigminer/VSHunter and CNV analysis
Detecting tumor mutational signatures with a CNN
B-Cell Lymphomas Mutational Signatures
SNMF: Integrated Learning of Mutational Signatures and Prediction of DNA Repair Deficiencies by Goossens S, Tepeli YI, Gonçalves JP
Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.
Shiny server for analyzing mutational signature data; uses mSigAct, ICAMS, and related functionality.
iMutSig: a web application to identify the most similar mutational signature using shiny
Algorithms for the generation of substitution matrices from intra-taxa variation data. Implemented and published on human genetic variation data.
Train and Predict Cancer Subtype with Keras Model based on Mutational Signatures
An R wrapper for running the SigProfilerPlotting framework
Detecting mutational signatures via bayesian inference and a reference catalog
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