SUPPA: Fast quantification of splicing and differential splicing
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
Interactive R package to quantify, analyse and visualise alternative splicing
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
Docker to run rMATS for splicing quantification and analysis
Docker to run VAST-TOOLS for splicing quantification and analysis
Docker to run MISO for splicing quantification and analysis
Calculate five major splicing events using rMATS followed by annotation
Docker to run SUPPA for splicing quantification and analysis
Docker to run Whippet for splicing quantification and analysis
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