tcga
Here are 114 public repositories matching this topic...
Collection of up-to-date metadata from TCGA.
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Mar 26, 2019
Example code supporting immunology research
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Oct 11, 2023 - HTML
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Oct 29, 2018 - R
A Shiny application for exploring TCGA breast cancer data
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Mar 7, 2019 - R
Directions and code for generic GDC data downloads.
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Apr 26, 2018
bulk-RNAseq analysis for Transcriptomics Course 2021 (MSc Bioinformatics for Computational Genomics)
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Apr 2, 2022 - HTML
Analyzing TCGA cohorts and multiomic data in R
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Dec 23, 2023
Python project for classification of normal vs tumoral samples using TCGA gene expression data for Scientific Programming Course 2021 (MSc Bioinformatics for Computational Genomics)
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Feb 12, 2022 - Jupyter Notebook
TCGA.SampleSelection wrapper module for GenePattern.
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Jan 3, 2024 - R
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Sep 10, 2019 - HTML
Patient stratification and molecular mechanism identification using patient clinotypes and transcriptomics embeddings
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Sep 7, 2022 - Jupyter Notebook
RNA-sequencing differential expression analysis (Deseq2 & edgeR)
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Oct 31, 2022 - R
Performing RNA-seq data analysis with limma package
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Feb 27, 2023 - R
An overview of Bioconductor with applications to multiomics, genome representation, and single-cell biologiy
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May 3, 2023 - R
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