Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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Updated
May 31, 2024 - Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
Whole Exome/Whole Genome Sequencing alignment pipeline
Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.
Clinical Whole Genome and Exome Sequencing Pipeline
An automated tool for processing whole-exome sequencing data
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
🐳 Dockerized WES pipeline for variants identification in mathced tumor-normal samples
Constructing Neoantigen Vaccine Pipeline with pVACtools
Pipeline for copy number variant calling from Whole Exome sequencing data using CODEX
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
Genetic Medicine of African Populations
Map and post-process your bams for SNP calling
LOVD+ -- LOVD for diagnostics: analysis of whole-exome data using LOVD.
Workspace for data science projects and NGS pipelines. Contains RStudio, Jupyter Notebook, VSCode and file manager. Can connect to Tailscale network to bypass firewalls.
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